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term4_saliva_scaffold_1_prodigal-single.1__X__X__00273
Bact-Virterm4_saliva_scaffold_1_prodigal-single.1__X__X__00273
Identity
- Kingdom:
- phage
Quality
72.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-53
Domain cluster:
representative
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5xs2B02 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.74 | 49.0 | 3.60e-01 | 82.7% | 27.3% |
| 6ksyA01 | 3.40.800.10 | Alpha Beta › 3-Layer(aba) Sandwich › Arginase; Chain A › Ureohydrolase domain | 0.61 | 52.0 | 3.25e-01 | 94.2% | 25.2% |
ECOD (3)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3184594 | 11.1.1.871 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF26282 | 0.58 | 44.0 | 3.11e-01 | 94.2% | 26.9% |
| 3196591 | 11.1.1.871 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF26282 | 0.57 | 44.0 | 3.07e-01 | 94.2% | 25.9% |
| 3599204 | 241.18.1.0 ↗ | a+b two layers › Type III secretory system chaperone-like › MRB1590 N-terminal domain › MRB1590 N-terminal domain | 0.56 | 48.0 | 3.20e-01 | 94.2% | 25.0% |
D2
high
residues 264-387
Domain cluster:
rep: OQ623132.1__WGH50158.1__X__00044__D2-127
CATH (17)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2l89A00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.61 | 32.0 | 3.44e-01 | 83.9% | 57.4% |
| 2p0wA02 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.60 | 35.0 | 3.41e-01 | 79.8% | 52.6% |
| 2in5A00 | 2.40.360.10 | Mainly Beta › Beta Barrel › YmcC-like fold › YmcC-like | 0.58 | 38.0 | 3.32e-01 | 100.0% | 42.6% |
| 4kcaA02 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.56 | 50.0 | 3.46e-01 | 96.0% | 45.3% |
| 2byoA00 | 2.50.20.20 | Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › | 0.55 | 48.0 | 4.24e-01 | 96.0% | 90.7% |
| 3gzrB00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.53 | 42.0 | 4.07e-01 | 86.3% | 90.8% |
| 2cw9A00 | 3.10.450.240 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.52 | 45.0 | 4.02e-01 | 96.8% | 92.3% |
| 7c5yA02 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.52 | 41.0 | 3.90e-01 | 85.5% | 100.0% |
| 3natA01 | 3.40.50.11250 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Protein of unknown function DUF3013 | 0.52 | 31.0 | 2.95e-01 | 93.5% | 49.0% |
| 7c5wA01 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.52 | 42.0 | 3.95e-01 | 86.3% | 100.0% |
| 3lh4A00 | 3.10.450.10 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.52 | 42.0 | 4.42e-01 | 100.0% | 95.7% |
| 4i4kA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.51 | 43.0 | 4.21e-01 | 91.1% | 92.0% |
| 1olzA01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.51 | 45.0 | 3.03e-01 | 96.0% | 53.5% |
| 3b8lA01 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.51 | 42.0 | 4.03e-01 | 89.5% | 90.1% |
| 1q42A00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.51 | 43.0 | 4.01e-01 | 93.5% | 97.5% |
| 4irzA01 | 2.130.10.130 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Integrin alpha, N-terminal | 0.50 | 42.0 | 2.95e-01 | 92.7% | 34.4% |
| 4lgqA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.50 | 40.0 | 3.93e-01 | 87.1% | 91.0% |
ECOD (21)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3498103 | 5.1.5.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed | 0.62 | 41.0 | 2.82e-01 | 82.3% | 19.6% |
| 3978775 | 4200.1.1.1 ↗ | beta barrels › YmcC-like › YmcC-like › YmcC-like › YjbF | 0.60 | 38.0 | 3.27e-01 | 100.0% | 40.9% |
| 2363 | 4200.1.1.1 ↗ | beta barrels › YmcC-like › YmcC-like › YmcC-like › YjbF | 0.58 | 38.0 | 3.32e-01 | 100.0% | 42.6% |
| 5051985 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.58 | 40.0 | 4.55e-01 | 91.9% | 98.9% |
| 3712703 | 4252.1.1.0 ↗ | beta barrels › AttH-like › AttH-like › AttH-like | 0.57 | 45.0 | 3.39e-01 | 83.9% | 83.8% |
| 3726341 | 1.1.5.31 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Pyridox_ox_2 | 0.55 | 39.0 | 3.26e-01 | 74.2% | 81.8% |
| 3428134 | 243.3.1.19 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › DUF3615 | 0.55 | 42.0 | 4.55e-01 | 93.5% | 100.0% |
| 3843014 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.54 | 41.0 | 4.39e-01 | 100.0% | 95.2% |
| 4973410 | 881.1.1.0 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like | 0.53 | 40.0 | 3.69e-01 | 79.0% | 70.0% |
| 3615602 | 243.1.1.0 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like | 0.52 | 46.0 | 4.27e-01 | 100.0% | 93.3% |
| 3924550 | 4026.1.1.0 ↗ | a+b three layers › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) | 0.52 | 34.0 | 3.16e-01 | 81.5% | 51.6% |
| 3830352 | 4.1.1.94 ↗ | beta barrels › SH3 › SH3 › SH3 › SAWADEE | 0.52 | 31.0 | 3.56e-01 | 83.1% | 83.5% |
| 4974879 | 881.1.1.0 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like | 0.52 | 38.0 | 3.47e-01 | 76.6% | 66.7% |
| 4370867 | 243.3.1.2 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › Cathelicidins | 0.51 | 36.0 | 4.08e-01 | 87.9% | 100.0% |
| 3934522 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.51 | 37.0 | 4.14e-01 | 89.5% | 100.0% |
| 5022489 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.51 | 44.0 | 3.00e-01 | 96.0% | 81.5% |
| 2443845 | 243.1.1.18 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 | 0.50 | 40.0 | 3.84e-01 | 87.9% | 85.4% |
| 2443846 | 243.1.1.0 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like | 0.50 | 41.0 | 3.80e-01 | 87.9% | 82.2% |
| 3279484 | 243.1.1.28 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF4440 | 0.50 | 41.0 | 4.05e-01 | 90.3% | 94.1% |
| 3185642 | 243.1.1.95 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › PF26528 | 0.50 | 45.0 | 3.96e-01 | 100.0% | 98.4% |
| 3690324 | 243.1.1.0 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like | 0.50 | 42.0 | 4.07e-01 | 92.7% | 95.0% |
D3
medium
residues 175-262
Domain cluster:
representative
CATH (19)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4rngC00 | 1.20.1280.290 | Mainly Alpha › Up-down Bundle › Monooxygenase › | 0.69 | 47.0 | 4.86e-01 | 70.5% | 88.0% |
| 4c0eA01 | 1.25.40.790 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.68 | 52.0 | 3.66e-01 | 85.2% | 25.4% |
| 4hojA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.66 | 47.0 | 4.47e-01 | 73.9% | 68.9% |
| 2qqyA00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.63 | 43.0 | 3.74e-01 | 70.5% | 92.0% |
| 1ailA00 | 1.10.287.10 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › S15/NS1, RNA-binding | 0.62 | 45.0 | 4.94e-01 | 86.4% | 97.1% |
| 3rmiA00 | 1.20.59.10 | Mainly Alpha › Up-down Bundle › Chorismate Mutase Domain, subunit A › Chorismate mutase | 0.62 | 45.0 | 4.29e-01 | 77.3% | 74.3% |
| 2pvqA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.61 | 45.0 | 4.29e-01 | 77.3% | 74.5% |
| 2odvA01 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.60 | 43.0 | 4.03e-01 | 76.1% | 86.6% |
| 4asvA00 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.58 | 45.0 | 4.70e-01 | 93.2% | 94.9% |
| 3uumA00 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.58 | 41.0 | 3.73e-01 | 75.0% | 78.7% |
| 4ip8A00 | 1.10.132.110 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Serum amyloid A protein | 0.57 | 46.0 | 4.33e-01 | 92.0% | 73.3% |
| 5ywwA01 | 3.40.50.1010 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 5'-nuclease | 0.56 | 46.0 | 4.22e-01 | 90.9% | 96.5% |
| 3kkbA00 | 1.20.120.880 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Histidine kinase (KinB), sensor domain | 0.55 | 49.0 | 4.38e-01 | 100.0% | 97.6% |
| 6xkyA01 | 1.20.1330.10 | Mainly Alpha › Up-down Bundle › f41 fragment of flagellin, N-terminal domain › f41 fragment of flagellin, N-terminal domain | 0.54 | 46.0 | 3.64e-01 | 95.5% | 67.4% |
| 3itfA00 | 1.20.120.1490 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.53 | 38.0 | 3.54e-01 | 75.0% | 98.2% |
| 4c1bA02 | 3.40.50.12700 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.52 | 38.0 | 3.65e-01 | 77.3% | 72.8% |
| 1jayA00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.52 | 38.0 | 2.94e-01 | 79.5% | 91.5% |
| 4hteA03 | 1.10.167.30 | Mainly Alpha › Orthogonal Bundle › Regulator of G-protein Signalling 4; domain 2 › | 0.51 | 39.0 | 4.10e-01 | 89.8% | 93.8% |
| 4mouC02 | 1.10.12.10 | Mainly Alpha › Orthogonal Bundle › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › Lyase 2-enoyl-coa Hydratase, Chain A, domain 2 | 0.50 | 31.0 | 3.59e-01 | 77.3% | 93.0% |
ECOD (13)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3576977 | 604.5.1.0 ↗ | alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) | 0.76 | 63.0 | 5.29e-01 | 88.6% | 94.5% |
| 3202941 | 6155.1.1.2 ↗ | alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › PQ-loop | 0.72 | 49.0 | 4.45e-01 | 70.5% | 64.3% |
| 1108450 | 109.4.1.58 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Not1 | 0.66 | 51.0 | 3.16e-01 | 83.0% | 15.0% |
| 3171168 | 6155.1.1.2 ↗ | alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › PQ-loop | 0.66 | 46.0 | 4.46e-01 | 72.7% | 75.0% |
| 3279122 | 106.1.1.0 ↗ | alpha arrays › Globin-like › Globin-like › Globin-like | 0.65 | 46.0 | 4.28e-01 | 77.3% | 59.1% |
| 4025804 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.64 | 47.0 | 3.91e-01 | 78.4% | 79.4% |
| 3276975 | 3826.1.1.0 ↗ | alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) | 0.60 | 41.0 | 3.63e-01 | 72.7% | 77.0% |
| 3448091 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.59 | 43.0 | 3.90e-01 | 75.0% | 84.2% |
| 3966605 | 601.4.1.84 ↗ | alpha bundles › Four-helical up-and-down bundle › Histidine kinase associated sensor domains › Histidine kinase associated sensor domains › KinB_sensor | 0.58 | 50.0 | 4.51e-01 | 94.3% | 95.0% |
| 4989317 | 5081.1.1.0 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like | 0.57 | 49.0 | 3.58e-01 | 97.7% | 98.1% |
| 377521 | 603.1.1.7 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins › KinB_sensor | 0.57 | 52.0 | 4.59e-01 | 100.0% | 93.8% |
| 3980912 | 601.4.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › Histidine kinase associated sensor domains › Histidine kinase associated sensor domains | 0.55 | 40.0 | 3.74e-01 | 78.4% | 87.8% |
| 3955719 | 191.1.1.33 ↗ | alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › TetR_C_31 | 0.54 | 43.0 | 3.87e-01 | 87.5% | 61.6% |