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term4_saliva_scaffold_5_prodigal-single.1__X__X__00036
Bact-Virterm4_saliva_scaffold_5_prodigal-single.1__X__X__00036
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 18-88
Domain cluster:
representative
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 7vjmB01 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.62 | 48.0 | 5.02e-01 | 85.9% | 98.4% |
| 4pu7A00 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.61 | 44.0 | 4.49e-01 | 78.9% | 84.5% |
| 4ybaA00 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.57 | 44.0 | 4.36e-01 | 90.1% | 79.2% |
| 6sdkA01 | 1.10.10.2830 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.55 | 35.0 | 3.16e-01 | 78.9% | 46.4% |
| 2mf4A01 | 1.10.1200.10 | Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like | 0.54 | 37.0 | 3.64e-01 | 93.0% | 63.4% |
| 1gx1A00 | 3.30.1330.50 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase | 0.54 | 42.0 | 3.27e-01 | 84.5% | 45.9% |
| 3d8lA00 | 1.10.8.940 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Uncharacterised protein, phage p2 ORF12 | 0.53 | 37.0 | 3.46e-01 | 73.2% | 59.3% |
| 3fp3A01 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.52 | 35.0 | 2.93e-01 | 71.8% | 51.9% |
| 3i0pA01 | 1.10.1530.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical Oxidoreductase Yiak; Chain: A, domain 1 › Malate/L-lactate/L-sulpholactate dehydrogenase, four-helix barrel | 0.51 | 40.0 | 3.60e-01 | 97.2% | 60.2% |
| 4ebjA02 | 1.20.120.330 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 | 0.50 | 39.0 | 3.36e-01 | 91.5% | 66.9% |
ECOD (9)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3952322 | 101.1.4.0 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like | 0.68 | 52.0 | 4.56e-01 | 81.7% | 82.9% |
| 4079594 | 6056.1.1.2 ↗ | alpha arrays › SP1917-like › SP1917-like › SP1917-like › PrmC_N | 0.65 | 47.0 | 4.64e-01 | 77.5% | 97.3% |
| 4481619 | 6056.1.1.2 ↗ | alpha arrays › SP1917-like › SP1917-like › SP1917-like › PrmC_N | 0.64 | 45.0 | 4.53e-01 | 73.2% | 100.0% |
| 4022186 | 101.1.4.58 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › DUF7726 | 0.63 | 43.0 | 4.58e-01 | 70.4% | 100.0% |
| 4977672 | 101.1.4.0 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like | 0.56 | 45.0 | 4.35e-01 | 90.1% | 80.0% |
| 3923974 | 3948.1.1.0 ↗ | alpha bundles › V(D)J recombination-activating protein 1 helical bundle domain › V(D)J recombination-activating protein 1 helical bundle domain › V(D)J recombination-activating protein 1 helical bundle domain | 0.54 | 45.0 | 3.50e-01 | 98.6% | 53.9% |
| 3643739 | 109.4.1.1275 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2, PPR_3, PPR_long, TPR_24 | 0.51 | 34.0 | 1.97e-01 | 70.4% | 9.1% |
| 3626429 | 101.1.1.20 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › CPSF_A | 0.50 | 36.0 | 3.29e-01 | 83.1% | 53.3% |
| 4013173 | 170.2.1.0 ↗ | alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein N-terminal domain › Retrovirus capsid protein N-terminal domain | 0.50 | 38.0 | 3.65e-01 | 84.5% | 76.5% |
D2
high
residues 97-239