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term4_saliva_scaffold_5_prodigal-single.1__X__X__00063
Bact-Virterm4_saliva_scaffold_5_prodigal-single.1__X__X__00063
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 15-194
Domain cluster:
rep: MG752970.1__AVH85374.1__RsoM2USA_446__00446__D13-175
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00004.36 best | AAA | 23.6 | 8.30e-05 | 82.2% | 90.1% |
| PF07728.21 | AAA_5 | 35.2 | 1.60e-08 | 80.0% | 89.2% |
D2
high
residues 200-321
Domain cluster:
rep: term4_saliva_scaffold_5_prodigal-single.1__X__X__00177__D199-318
D3
high
residues 344-494
Domain cluster:
representative
CATH (27)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2d2sA01 | 1.20.58.1210 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Exo84p, N-terminal helical domain | 0.73 | 39.0 | 4.40e-01 | 92.1% | 67.2% |
| 6srbA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.66 | 46.0 | 5.23e-01 | 100.0% | 98.2% |
| 4g10A02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.64 | 47.0 | 4.90e-01 | 99.3% | 82.4% |
| 4gltA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.64 | 43.0 | 4.86e-01 | 99.3% | 90.4% |
| 2zueA03 | 1.10.730.10 | Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 | 0.63 | 38.0 | 4.29e-01 | 82.1% | 76.5% |
| 1j1jA01 | 1.20.58.190 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 1 | 0.60 | 42.0 | 4.43e-01 | 98.7% | 81.1% |
| 3ubkB02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.59 | 43.0 | 4.66e-01 | 100.0% | 92.0% |
| 2pftA00 | 1.20.1280.170 | Mainly Alpha › Up-down Bundle › Monooxygenase › Exocyst complex component Exo70 | 0.58 | 53.0 | 3.57e-01 | 97.4% | 34.7% |
| 4u7iA00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.57 | 34.0 | 4.24e-01 | 83.4% | 95.7% |
| 3ckcA01 | 1.25.40.390 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.56 | 45.0 | 4.00e-01 | 86.1% | 96.8% |
| 6a95A01 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.54 | 37.0 | 4.00e-01 | 92.1% | 82.5% |
| 3ihvA01 | 1.25.40.890 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.54 | 42.0 | 4.11e-01 | 97.4% | 75.6% |
| 4crwA00 | 1.25.40.180 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.53 | 41.0 | 3.62e-01 | 84.1% | 55.3% |
| 2rekA00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.52 | 40.0 | 3.89e-01 | 86.1% | 70.9% |
| 4nwpD00 | 1.20.1200.10 | Mainly Alpha › Up-down Bundle › Hypothetical Protein Ta1238; Chain: A; › Cobalamin adenosyltransferase-like | 0.52 | 41.0 | 4.12e-01 | 98.7% | 83.2% |
| 1zoyD00 | 1.20.1300.10 | Mainly Alpha › Up-down Bundle › 3 helical TM bundles of succinate and fumarate reductases › Fumarate reductase/succinate dehydrogenase, transmembrane subunit | 0.52 | 30.0 | 3.68e-01 | 84.8% | 85.3% |
| 1a7eA00 | 1.20.120.50 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Hemerythrin-like | 0.52 | 34.0 | 3.86e-01 | 92.7% | 83.9% |
| 1w99A01 | 1.20.190.10 | Mainly Alpha › Up-down Bundle › Delta-Endotoxin; domain 1 › Pesticidal crystal protein, N-terminal domain | 0.52 | 48.0 | 4.62e-01 | 100.0% | 91.3% |
| 3l6aA01 | 1.25.40.180 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.52 | 39.0 | 3.69e-01 | 79.5% | 81.6% |
| 2qupA00 | 1.20.120.490 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Hypothetical protein TM1646-like domain | 0.52 | 37.0 | 4.09e-01 | 94.7% | 91.6% |
| 7fhyB01 | 1.50.10.100 | Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › Chondroitin AC/alginate lyase | 0.51 | 47.0 | 3.78e-01 | 100.0% | 54.3% |
| 1wolA00 | 1.20.120.330 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 | 0.51 | 39.0 | 4.26e-01 | 92.7% | 99.2% |
| 1orjD00 | 1.20.120.340 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Flagellar protein FliS | 0.51 | 33.0 | 3.67e-01 | 92.1% | 80.8% |
| 4in3B00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.50 | 45.0 | 3.06e-01 | 99.3% | 98.6% |
| 4wqoD00 | 1.20.1310.10 | Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats | 0.50 | 37.0 | 3.85e-01 | 89.4% | 82.3% |
| 3c18A02 | 1.20.120.330 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 | 0.50 | 35.0 | 3.93e-01 | 94.7% | 91.5% |
| 2hsbA00 | 1.20.120.330 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 | 0.50 | 39.0 | 4.25e-01 | 96.0% | 100.0% |
ECOD (36)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4014512 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.70 | 48.0 | 4.39e-01 | 70.2% | 88.0% |
| 3839889 | 601.51.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-helical domain in phase 1 flagellin › alpha-helical domain in phase 1 flagellin | 0.63 | 35.0 | 3.58e-01 | 87.4% | 55.9% |
| 3625427 | 174.1.1.0 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain | 0.62 | 35.0 | 4.00e-01 | 86.1% | 72.2% |
| 3709914 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.62 | 48.0 | 3.67e-01 | 81.5% | 92.7% |
| 4881792 | 109.3.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat | 0.61 | 46.0 | 4.70e-01 | 100.0% | 81.4% |
| 3775676 | 1065.1.1.7 ↗ | alpha bundles › SPX domain › SPX domain › SPX domain › EPS8_2nd | 0.60 | 42.0 | 4.11e-01 | 100.0% | 63.5% |
| 4883406 | 622.4.1.1 ↗ | alpha bundles › YvfG-like › Mite allergen Der p 5-related › Mite allergen Der p 5-related › Blo-t-5 | 0.59 | 39.0 | 4.38e-01 | 81.5% | 86.2% |
| 3608883 | 109.4.1.150 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Ufd2P_core | 0.58 | 52.0 | 3.37e-01 | 100.0% | 46.1% |
| 3525986 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.58 | 32.0 | 3.66e-01 | 84.8% | 72.7% |
| 4074842 | 604.9.1.10 ↗ | alpha bundles › Spectrin repeat-like › Ribosomal protein S20 › Ribosomal protein S20 › EPS8_2nd | 0.58 | 42.0 | 4.10e-01 | 100.0% | 68.5% |
| 5014922 | 109.2.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid | 0.57 | 42.0 | 3.62e-01 | 96.0% | 49.6% |
| 4027059 | 601.13.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › Flagellar export chaperone FliS › Flagellar export chaperone FliS | 0.57 | 39.0 | 3.96e-01 | 92.1% | 71.7% |
| 3814731 | 109.4.1.575 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DUF577 | 0.57 | 45.0 | 3.53e-01 | 97.4% | 40.6% |
| 3250063 | 109.4.1.87 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Sec6 | 0.56 | 51.0 | 3.27e-01 | 96.7% | 26.0% |
| 5065782 | 1075.5.1.4 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Multidrug and toxic compound extrusion (MATE) transporter › Multidrug and toxic compound extrusion (MATE) transporter › Polysacc_synt | 0.56 | 43.0 | 3.89e-01 | 96.7% | 60.0% |
| 4998876 | 3745.1.1.1 ↗ | alpha bundles › Sodium/Calcium exchanger › Sodium/Calcium exchanger › Sodium/Calcium exchanger › Na_Ca_ex | 0.56 | 49.0 | 3.70e-01 | 98.0% | 87.8% |
| 3783732 | 109.4.1.335 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › SEN1_N | 0.53 | 49.0 | 3.87e-01 | 100.0% | 51.0% |
| 5051745 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.53 | 43.0 | 3.32e-01 | 86.8% | 41.2% |
| 5065169 | 1075.5.1.0 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Multidrug and toxic compound extrusion (MATE) transporter › Multidrug and toxic compound extrusion (MATE) transporter | 0.53 | 41.0 | 3.40e-01 | 84.1% | 84.2% |
| 4782662 | 109.3.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat | 0.53 | 48.0 | 4.20e-01 | 100.0% | 67.7% |
| 4011042 | 109.4.1.356 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fungal_trans | 0.52 | 45.0 | 3.16e-01 | 100.0% | 29.8% |
| 3974221 | 601.4.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › Histidine kinase associated sensor domains › Histidine kinase associated sensor domains | 0.52 | 36.0 | 3.82e-01 | 92.1% | 80.8% |
| 3431685 | 109.62.1.3 ↗ | alpha superhelices › Repetitive alpha hairpins › AFF4 C-terminal homology domain › AFF4 C-terminal homology domain › THD_CWZF3-5-7 | 0.52 | 46.0 | 4.23e-01 | 100.0% | 74.0% |
| 3609065 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.52 | 47.0 | 3.06e-01 | 98.0% | 31.2% |
| 3575436 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.52 | 37.0 | 3.04e-01 | 100.0% | 38.6% |
| 5053890 | 601.7.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain | 0.52 | 38.0 | 4.27e-01 | 92.1% | 100.0% |
| 3367959 | 109.62.1.3 ↗ | alpha superhelices › Repetitive alpha hairpins › AFF4 C-terminal homology domain › AFF4 C-terminal homology domain › THD_CWZF3-5-7 | 0.51 | 44.0 | 3.87e-01 | 97.4% | 62.7% |
| 3373319 | 5059.1.1.8 ↗ | alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › Mg_trans_NIPA | 0.51 | 38.0 | 3.65e-01 | 78.8% | 83.3% |
| 3720326 | 109.4.1.356 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fungal_trans | 0.51 | 46.0 | 3.28e-01 | 100.0% | 36.9% |
| 5006341 | 601.7.1.2 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › HEPN | 0.51 | 41.0 | 4.37e-01 | 93.4% | 100.0% |
| 3730199 | 109.4.1.356 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fungal_trans | 0.51 | 43.0 | 2.98e-01 | 90.1% | 39.9% |
| 3591139 | 109.4.1.508 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › KBP_C | 0.50 | 43.0 | 4.02e-01 | 100.0% | 73.7% |
| 3460046 | 109.62.1.3 ↗ | alpha superhelices › Repetitive alpha hairpins › AFF4 C-terminal homology domain › AFF4 C-terminal homology domain › THD_CWZF3-5-7 | 0.50 | 45.0 | 4.02e-01 | 99.3% | 74.5% |
| 3681569 | 1065.1.1.1 ↗ | alpha bundles › SPX domain › SPX domain › SPX domain › SPX | 0.50 | 45.0 | 3.82e-01 | 96.7% | 61.2% |
| 5031425 | 601.7.1.3 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › PaREP1 | 0.50 | 39.0 | 4.19e-01 | 97.4% | 96.2% |
| 5054741 | 601.7.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain | 0.50 | 35.0 | 4.00e-01 | 94.7% | 100.0% |