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term4_saliva_scaffold_5_prodigal-single.1__X__X__00069
Bact-Virterm4_saliva_scaffold_5_prodigal-single.1__X__X__00069
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 32-118
Domain cluster:
representative
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2kkpA00 | 1.10.150.130 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain | 0.65 | 44.0 | 3.94e-01 | 80.5% | 51.3% |
| 4uavA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.61 | 47.0 | 4.80e-01 | 86.2% | 84.7% |
| 1bwoA00 | 1.10.110.10 | Mainly Alpha › Orthogonal Bundle › Hydrophobic Seed Protein › Plant lipid-transfer and hydrophobic proteins | 0.60 | 39.0 | 3.86e-01 | 75.9% | 62.2% |
| 2og9A01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.60 | 44.0 | 3.83e-01 | 98.9% | 50.8% |
| 2gf4A00 | 1.20.1270.110 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Uncharacterised protein family UPF0058 | 0.54 | 41.0 | 4.15e-01 | 83.9% | 79.5% |
| 2jexA01 | 1.10.287.30 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › E2 (early) protein, N terminal domain, subdomain 1 | 0.54 | 43.0 | 4.22e-01 | 87.4% | 93.8% |
| 4bs9A02 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.53 | 46.0 | 3.56e-01 | 96.6% | 65.9% |
| 1sxjD02 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.53 | 31.0 | 3.42e-01 | 75.9% | 71.4% |
| 2yqzA02 | 1.10.8.900 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.52 | 35.0 | 3.89e-01 | 75.9% | 89.7% |
| 6qumA04 | 1.10.1140.10 | Mainly Alpha › Orthogonal Bundle › Bovine Mitochondrial F1-ATPase, ATP Synthase Beta Chain; Chain D, domain3 › Bovine Mitochondrial F1-atpase; Atp Synthase Beta Chain; Chain D, domain 3 | 0.52 | 42.0 | 3.54e-01 | 88.5% | 60.4% |
| 4oogC01 | 1.10.1520.10 | Mainly Alpha › Orthogonal Bundle › Ribonuclease iii, N-terminal Endonuclease Domain; Chain A › Ribonuclease III domain | 0.50 | 42.0 | 3.47e-01 | 93.1% | 96.3% |
ECOD (27)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5051051 | 101.1.17.0 ↗ | alpha arrays › HTH › HTH › FF domain | 0.91 | 82.0 | 6.36e-01 | 100.0% | 48.2% |
| 4945101 | 101.1.17.0 ↗ | alpha arrays › HTH › HTH › FF domain | 0.90 | 81.0 | 6.17e-01 | 100.0% | 45.6% |
| 4946450 | 101.1.17.0 ↗ | alpha arrays › HTH › HTH › FF domain | 0.89 | 75.0 | 7.47e-01 | 93.1% | 86.4% |
| 4945073 | 101.1.17.0 ↗ | alpha arrays › HTH › HTH › FF domain | 0.89 | 73.0 | 7.26e-01 | 92.0% | 83.3% |
| 5012315 | 2.21.1.0 ↗ | beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) | 0.89 | 77.0 | 5.80e-01 | 100.0% | 42.7% |
| 4994779 | 7000.1.1.0 ↗ | alpha arrays › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS | 0.86 | 73.0 | 7.42e-01 | 98.9% | 91.8% |
| 4999336 | 7000.1.1.0 ↗ | alpha arrays › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS | 0.86 | 72.0 | 7.29e-01 | 100.0% | 90.6% |
| 4999064 | 7000.1.1.1 ↗ | alpha arrays › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS › HTH_OrfB_IS605 | 0.85 | 72.0 | 7.13e-01 | 100.0% | 86.7% |
| 4935180 | 198.1.1.0 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like | 0.84 | 69.0 | 6.61e-01 | 100.0% | 76.0% |
| 5002913 | 2.21.1.3 ↗ | beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) › HTH_OrfB_IS605 | 0.83 | 69.0 | 5.42e-01 | 100.0% | 45.3% |
| 5044635 | 2.21.1.3 ↗ | beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) › HTH_OrfB_IS605 | 0.81 | 69.0 | 5.37e-01 | 100.0% | 45.1% |
| 4975514 | 7000.1.1.0 ↗ | alpha arrays › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS | 0.81 | 64.0 | 6.69e-01 | 100.0% | 91.3% |
| 5065106 | 7000.1.1.1 ↗ | alpha arrays › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS › HTH_OrfB_IS605 | 0.80 | 63.0 | 6.57e-01 | 100.0% | 90.0% |
| 5021605 | 2.21.1.3 ↗ | beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) › HTH_OrfB_IS605 | 0.79 | 61.0 | 4.91e-01 | 100.0% | 43.6% |
| 3723084 | 101.1.17.0 ↗ | alpha arrays › HTH › HTH › FF domain | 0.74 | 49.0 | 5.39e-01 | 71.3% | 84.3% |
| 3286638 | 2.21.1.3 ↗ | beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) › HTH_OrfB_IS605 | 0.74 | 67.0 | 5.33e-01 | 100.0% | 80.6% |
| 3986141 | 7000.1.1.1 ↗ | alpha arrays › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS › HTH_OrfB_IS605 | 0.72 | 62.0 | 6.01e-01 | 100.0% | 85.3% |
| 4994506 | 8001.1.1.3 ↗ | alpha arrays › N-terminal domain of large tumor antigen › N-terminal domain of large tumor antigen › N-terminal domain of large tumor antigen › PF27234 | 0.67 | 56.0 | 5.46e-01 | 96.6% | 83.2% |
| 3397014 | 3998.1.1.1 ↗ | alpha arrays › Peptidase inhibitors family I29 › Peptidase inhibitors family I29 › Peptidase inhibitors family I29 › Inhibitor_I29 | 0.60 | 43.0 | 4.86e-01 | 98.9% | 98.5% |
| 3233568 | 3998.1.1.1 ↗ | alpha arrays › Peptidase inhibitors family I29 › Peptidase inhibitors family I29 › Peptidase inhibitors family I29 › Inhibitor_I29 | 0.59 | 41.0 | 4.41e-01 | 72.4% | 92.0% |
| 3575739 | 3998.1.1.0 ↗ | alpha arrays › Peptidase inhibitors family I29 › Peptidase inhibitors family I29 › Peptidase inhibitors family I29 | 0.58 | 42.0 | 3.21e-01 | 74.7% | 64.7% |
| 3810002 | 101.1.2.111 ↗ | alpha arrays › HTH › HTH › winged helix domain › RQC | 0.56 | 49.0 | 4.54e-01 | 100.0% | 76.4% |
| 3456467 | 4970.1.1.0 ↗ | alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I | 0.55 | 41.0 | 4.18e-01 | 79.3% | 85.9% |
| 4872001 | 148.1.1.1 ↗ | alpha arrays › Histone-like › Histone-related › Histone › Histone | 0.53 | 37.0 | 3.56e-01 | 71.3% | 76.5% |
| 3502474 | 1056.1.1.1 ↗ | a+b two layers › tRNA pseudouridine synthase TruD insertion domain › tRNA pseudouridine synthase TruD insertion domain › tRNA pseudouridine synthase TruD insertion domain › TruD | 0.53 | 41.0 | 3.48e-01 | 85.1% | 60.0% |
| 3401392 | 633.1.1.1 ↗ | alpha bundles › Bromodomain-like › Bromodomain › Bromodomain › Bromodomain | 0.52 | 38.0 | 3.36e-01 | 77.0% | 68.5% |
| 4999372 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.52 | 46.0 | 2.97e-01 | 97.7% | 24.1% |