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term4_saliva_scaffold_5_prodigal-single.1__X__X__00080

Bact-Vir

term4_saliva_scaffold_5_prodigal-single.1__X__X__00080

Identity

Kingdom:
phage

Quality

90.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-127
PDB
Domain cluster: rep: term4_saliva_scaffold_1_prodigal-single.1__X__X__00250__D4-115
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2k7iA01 3.30.160.160 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › YegP-like 0.67 24.0 3.63e-01 86.5% 79.2%
1a15A00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.58 24.0 3.21e-01 79.4% 70.1%
2kgtA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.57 30.0 3.81e-01 73.8% 88.9%
2x5cA01 3.30.70.3590 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.56 33.0 3.86e-01 84.9% 81.3%
2cy5A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 38.0 3.85e-01 74.6% 85.3%
2gtlO02 2.40.128.620 Mainly Beta › Beta Barrel › Lipocalin › 0.53 40.0 3.68e-01 79.4% 77.3%
4ge1C00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.50 43.0 3.83e-01 96.0% 83.4%
ECOD (17)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5075465 4325.1.1.0 ↗ mixed a+b and a/b › YegP-like › YegP-like › YegP-like 0.69 27.0 3.74e-01 90.5% 71.7%
4117297 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 32.0 4.02e-01 76.2% 88.6%
396031 4.22.1.1 ↗ beta barrels › SH3 › Hypothetical protein ORF131 › Hypothetical protein ORF131 › PSV_ORF131-like_dom 0.54 32.0 3.53e-01 85.7% 72.3%
3547482 220.1.1.4 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Ran_BP1 0.53 38.0 3.49e-01 75.4% 55.3%
3987799 4221.1.1.1 ↗ a+b two layers › YkuJ-like › YkuJ-like › YkuJ-like › DUF1797 0.53 28.0 3.59e-01 92.9% 90.0%
3522591 220.1.1.4 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Ran_BP1 0.53 38.0 2.90e-01 75.4% 31.3%
4213135 4.1.1.38 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L2_C 0.53 32.0 3.25e-01 87.3% 58.9%
3624142 9.1.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin 0.52 38.0 3.68e-01 74.6% 95.0%
3882333 220.1.1.4 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Ran_BP1 0.52 37.0 3.70e-01 74.6% 70.8%
4976853 220.5.1.1 ↗ beta barrels › PH domain-like › NucS N-terminal domain › NucS N-terminal domain › NucS_N 0.52 42.0 4.28e-01 86.5% 100.0%
3795930 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.52 37.0 3.66e-01 74.6% 95.0%
3246548 844.1.1.0 ↗ beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain 0.51 39.0 3.47e-01 78.6% 78.9%
4224041 4.6.1.2 ↗ beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC 0.51 29.0 3.48e-01 95.2% 89.3%
4019871 331.3.1.0 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.51 38.0 3.19e-01 77.8% 84.2%
3493294 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 33.0 3.16e-01 74.6% 55.9%
3241614 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.50 44.0 4.26e-01 97.6% 93.1%
4029544 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.50 35.0 3.40e-01 71.4% 67.1%