←Back to structures
term4_saliva_scaffold_5_prodigal-single.1__X__X__00089
Bact-Virterm4_saliva_scaffold_5_prodigal-single.1__X__X__00089
Identity
- Kingdom:
- phage
Quality
70.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 30-172
Domain cluster:
representative
CATH (34)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2g30A02 | 3.30.310.10 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein | 0.80 | 52.0 | 5.76e-01 | 78.3% | 81.0% |
| 2mj7A00 | 3.30.310.10 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein | 0.79 | 55.0 | 5.54e-01 | 79.7% | 70.9% |
| 3c6kA01 | 3.30.160.110 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Sirohaem synthase, central domain | 0.76 | 45.0 | 5.47e-01 | 78.3% | 89.4% |
| 1pzdA02 | 3.30.310.10 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein | 0.69 | 45.0 | 5.02e-01 | 74.8% | 82.6% |
| 2cdqA03 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.67 | 36.0 | 4.51e-01 | 86.0% | 88.1% |
| 3qszA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.65 | 58.0 | 5.44e-01 | 97.9% | 98.3% |
| 2r55A00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.64 | 57.0 | 5.04e-01 | 97.9% | 85.6% |
| 1jssA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.64 | 57.0 | 5.10e-01 | 97.9% | 88.9% |
| 1kfiA04 | 3.30.310.50 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Alpha-D-phosphohexomutase, C-terminal domain | 0.64 | 47.0 | 4.97e-01 | 76.2% | 93.6% |
| 1ry9A00 | 3.30.1460.10 | Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › | 0.62 | 52.0 | 5.37e-01 | 99.3% | 94.0% |
| 1bdfA01 | 3.30.1360.10 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › RNA polymerase, RBP11-like subunit | 0.62 | 39.0 | 4.46e-01 | 86.0% | 84.9% |
| 4noiA01 | 3.30.1360.10 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › RNA polymerase, RBP11-like subunit | 0.61 | 38.0 | 4.45e-01 | 84.6% | 87.4% |
| 3va7A05 | 3.30.1360.40 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › | 0.60 | 41.0 | 4.73e-01 | 97.9% | 99.0% |
| 3lssA02 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.59 | 49.0 | 3.81e-01 | 90.2% | 76.1% |
| 4esqA00 | 3.40.1000.70 | Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › PknH-like extracellular domain | 0.59 | 45.0 | 4.11e-01 | 80.4% | 76.3% |
| 1k8kD01 | 3.30.1460.20 | Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › | 0.58 | 49.0 | 4.81e-01 | 100.0% | 84.1% |
| 2gysA03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.58 | 34.0 | 4.21e-01 | 86.7% | 95.3% |
| 1di2A00 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.57 | 29.0 | 3.82e-01 | 93.7% | 97.1% |
| 4gioA00 | 2.60.40.3230 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.56 | 37.0 | 4.42e-01 | 93.0% | 100.0% |
| 3ialA01 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.56 | 47.0 | 3.79e-01 | 90.9% | 93.2% |
| 6g9sA01 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.56 | 39.0 | 2.95e-01 | 70.6% | 94.7% |
| 2l2mA00 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.55 | 28.0 | 3.72e-01 | 90.9% | 97.1% |
| 7z0sE01 | 3.30.460.80 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › NADH:ubiquinone oxidoreductase Nqo5 subunit | 0.54 | 34.0 | 3.65e-01 | 71.3% | 73.1% |
| 1f49A05 | 2.70.98.10 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.54 | 44.0 | 3.52e-01 | 87.4% | 91.0% |
| 3ecfA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.54 | 36.0 | 3.75e-01 | 80.4% | 73.4% |
| 6j8yC00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.54 | 38.0 | 3.11e-01 | 71.3% | 99.2% |
| 1f0cA02 | 2.30.39.10 | Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 | 0.54 | 29.0 | 3.16e-01 | 77.6% | 62.7% |
| 2z4hA01 | 2.40.128.300 | Mainly Beta › Beta Barrel › Lipocalin › NlpE, N-terminal domain | 0.53 | 26.0 | 3.37e-01 | 87.4% | 82.3% |
| 3imhA00 | 2.70.98.10 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.53 | 46.0 | 3.57e-01 | 97.2% | 90.1% |
| 2rjzA02 | 3.30.70.60 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B | 0.52 | 35.0 | 4.12e-01 | 84.6% | 98.0% |
| 2eenA00 | 2.40.320.10 | Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 | 0.52 | 39.0 | 3.66e-01 | 78.3% | 92.1% |
| 6bn3A00 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.52 | 37.0 | 3.09e-01 | 74.1% | 93.3% |
| 1ja1A02 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.51 | 37.0 | 3.97e-01 | 88.1% | 86.9% |
| 1mwsA04 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.50 | 45.0 | 3.46e-01 | 98.6% | 93.4% |
ECOD (44)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4026208 | 331.9.1.2 ↗ | a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain › B2-adapt-app_C | 0.79 | 52.0 | 5.75e-01 | 79.7% | 82.6% |
| 4026594 | 331.9.1.2 ↗ | a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain › B2-adapt-app_C | 0.78 | 54.0 | 5.88e-01 | 79.0% | 85.6% |
| 3237828 | 331.9.1.9 ↗ | a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain › PF26171 | 0.77 | 48.0 | 5.42e-01 | 77.6% | 80.9% |
| 3352272 | 331.9.1.2 ↗ | a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain › B2-adapt-app_C | 0.76 | 50.0 | 5.54e-01 | 78.3% | 82.6% |
| 3236101 | 331.4.1.0 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 | 0.74 | 50.0 | 5.78e-01 | 83.2% | 97.0% |
| 3702663 | 881.1.1.0 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like | 0.74 | 51.0 | 5.17e-01 | 80.4% | 70.3% |
| 3210170 | 331.2.1.1 ↗ | a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain › PGM_PMM_IV | 0.72 | 55.0 | 5.35e-01 | 80.4% | 87.5% |
| 4970858 | 331.3.1.0 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like | 0.72 | 50.0 | 5.65e-01 | 76.2% | 93.6% |
| 3565845 | 331.9.1.4 ↗ | a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain › Coatomer_g_Cpla | 0.69 | 45.0 | 4.86e-01 | 74.8% | 76.6% |
| 3962288 | 331.3.1.0 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like | 0.69 | 53.0 | 5.56e-01 | 81.1% | 96.9% |
| 3592576 | 305.1.1.0 ↗ | a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase | 0.68 | 39.0 | 4.20e-01 | 84.6% | 64.8% |
| 3365246 | 331.3.1.5 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc | 0.67 | 55.0 | 5.23e-01 | 88.1% | 95.3% |
| 2583626 | 331.3.1.14 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › DUF3568 | 0.67 | 48.0 | 5.30e-01 | 86.7% | 92.2% |
| 3599881 | 881.1.1.0 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like | 0.67 | 49.0 | 4.94e-01 | 83.2% | 75.2% |
| 3332026 | 331.3.1.28 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › DUF220 | 0.66 | 55.0 | 5.00e-01 | 89.5% | 87.9% |
| 3593787 | 331.3.1.0 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like | 0.66 | 57.0 | 4.93e-01 | 95.1% | 84.9% |
| 3654098 | 331.3.1.5 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc | 0.65 | 54.0 | 4.89e-01 | 90.2% | 95.9% |
| 3740851 | 331.3.1.30 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › DUF3074 | 0.65 | 58.0 | 4.95e-01 | 97.9% | 80.3% |
| 1309699 | 881.1.1.11 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › DUF5642 | 0.64 | 45.0 | 4.09e-01 | 71.3% | 100.0% |
| 3679001 | 881.1.1.1 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › PsbP | 0.64 | 51.0 | 4.69e-01 | 82.5% | 78.2% |
| 4140206 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.63 | 34.0 | 4.30e-01 | 96.5% | 88.2% |
| 4992590 | 881.2.1.0 ↗ | a+b three layers › Mog1p/PsbP-like › TM1622-like › TM1622-like | 0.63 | 50.0 | 4.66e-01 | 83.2% | 73.7% |
| 3598878 | 881.1.1.0 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like | 0.62 | 49.0 | 4.68e-01 | 83.2% | 92.9% |
| 5078475 | 881.1.1.0 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like | 0.62 | 45.0 | 4.53e-01 | 82.5% | 74.5% |
| 4024164 | 314.1.1.3 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2d | 0.61 | 50.0 | 4.14e-01 | 87.4% | 82.7% |
| 4397160 | 305.1.1.1 ↗ | a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase › RNA_pol_L | 0.61 | 40.0 | 4.25e-01 | 84.6% | 75.2% |
| 3783000 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.61 | 40.0 | 4.77e-01 | 82.5% | 100.0% |
| 3954338 | 881.1.1.0 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like | 0.59 | 45.0 | 4.18e-01 | 79.7% | 71.4% |
| 4964237 | 331.1.1.0 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like | 0.59 | 45.0 | 4.92e-01 | 83.2% | 97.4% |
| 4403450 | 305.1.1.1 ↗ | a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase › RNA_pol_L | 0.59 | 38.0 | 4.09e-01 | 85.3% | 75.8% |
| 4607326 | 305.1.1.1 ↗ | a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase › RNA_pol_L | 0.59 | 37.0 | 4.19e-01 | 82.5% | 84.8% |
| 4427322 | 305.1.1.1 ↗ | a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase › RNA_pol_L | 0.59 | 38.0 | 4.14e-01 | 87.4% | 77.5% |
| 4057397 | 305.1.1.1 ↗ | a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase › RNA_pol_L | 0.58 | 41.0 | 4.46e-01 | 87.4% | 87.8% |
| 3617638 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.57 | 29.0 | 3.39e-01 | 93.0% | 66.7% |
| 3704463 | 314.1.1.2 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2b | 0.57 | 44.0 | 3.82e-01 | 80.4% | 76.8% |
| 3493572 | 314.1.1.2 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2b | 0.57 | 48.0 | 3.69e-01 | 93.0% | 87.8% |
| 4360386 | 314.1.1.2 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2b | 0.56 | 47.0 | 3.61e-01 | 90.9% | 75.7% |
| 4187121 | 305.1.1.1 ↗ | a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase › RNA_pol_L | 0.54 | 36.0 | 3.88e-01 | 81.8% | 79.2% |
| 3991799 | 708.1.1.9 ↗ | beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › CG-1 | 0.54 | 41.0 | 3.75e-01 | 79.0% | 84.9% |
| 3490493 | 708.1.1.9 ↗ | beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › CG-1 | 0.54 | 41.0 | 3.77e-01 | 80.4% | 82.1% |
| 3590557 | 4014.1.1.1 ↗ | a+b two layers › a+b domain in type II DNA topoisomerase › a+b domain in type II DNA topoisomerase › a+b domain in type II DNA topoisomerase › DNA_topoisoIV | 0.53 | 39.0 | 3.55e-01 | 90.2% | 55.9% |
| 3784394 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.52 | 38.0 | 2.66e-01 | 75.5% | 99.3% |
| 3516145 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.51 | 30.0 | 3.74e-01 | 84.6% | 100.0% |
| 4541115 | 305.1.1.1 ↗ | a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase › RNA_pol_L | 0.50 | 36.0 | 3.86e-01 | 88.1% | 85.6% |