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term4_saliva_scaffold_5_prodigal-single.1__X__X__00109
Bact-Virterm4_saliva_scaffold_5_prodigal-single.1__X__X__00109
Identity
- Kingdom:
- phage
Quality
92.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 9-139
Domain cluster:
representative
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1ydxA03 | 3.90.220.20 | Alpha Beta › Alpha-Beta Complex › Adenine-n6-DNA-methyltransferase TaqI; Chain A, domain 2 › DNA methylase specificity domains | 0.75 | 61.0 | 5.93e-01 | 90.8% | 77.1% |
| 7btoI01 | 3.90.220.20 | Alpha Beta › Alpha-Beta Complex › Adenine-n6-DNA-methyltransferase TaqI; Chain A, domain 2 › DNA methylase specificity domains | 0.70 | 64.0 | 6.08e-01 | 100.0% | 87.0% |
| 7btoI02 | 3.90.220.20 | Alpha Beta › Alpha-Beta Complex › Adenine-n6-DNA-methyltransferase TaqI; Chain A, domain 2 › DNA methylase specificity domains | 0.70 | 63.0 | 5.76e-01 | 100.0% | 85.7% |
| 3okgA02 | 3.90.220.20 | Alpha Beta › Alpha-Beta Complex › Adenine-n6-DNA-methyltransferase TaqI; Chain A, domain 2 › DNA methylase specificity domains | 0.68 | 61.0 | 5.46e-01 | 100.0% | 69.4% |
| 7r8iA01 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.52 | 34.0 | 2.85e-01 | 84.0% | 39.2% |
ECOD (24)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4279553 | 4333.1.1.1 ↗ | a+b complex topology › DNA methylase specificity domain › DNA methylase specificity domain › DNA methylase specificity domain › Methylase_S | 0.91 | 87.0 | 8.01e-01 | 100.0% | 81.2% |
| 4157881 | 4333.1.1.1 ↗ | a+b complex topology › DNA methylase specificity domain › DNA methylase specificity domain › DNA methylase specificity domain › Methylase_S | 0.90 | 86.0 | 7.69e-01 | 100.0% | 76.5% |
| 3839864 | 4333.1.1.1 ↗ | a+b complex topology › DNA methylase specificity domain › DNA methylase specificity domain › DNA methylase specificity domain › Methylase_S | 0.87 | 83.0 | 5.71e-01 | 100.0% | 35.9% |
| 3964449 | 4333.1.1.1 ↗ | a+b complex topology › DNA methylase specificity domain › DNA methylase specificity domain › DNA methylase specificity domain › Methylase_S | 0.85 | 77.0 | 7.50e-01 | 100.0% | 87.9% |
| 4458448 | 4333.1.1.1 ↗ | a+b complex topology › DNA methylase specificity domain › DNA methylase specificity domain › DNA methylase specificity domain › Methylase_S | 0.80 | 72.0 | 5.23e-01 | 100.0% | 37.9% |
| 4093841 | 4333.1.1.1 ↗ | a+b complex topology › DNA methylase specificity domain › DNA methylase specificity domain › DNA methylase specificity domain › Methylase_S | 0.79 | 72.0 | 5.89e-01 | 100.0% | 57.1% |
| 5002485 | 4333.1.1.1 ↗ | a+b complex topology › DNA methylase specificity domain › DNA methylase specificity domain › DNA methylase specificity domain › Methylase_S | 0.78 | 72.0 | 6.27e-01 | 100.0% | 67.4% |
| 3838563 | 4333.1.1.1 ↗ | a+b complex topology › DNA methylase specificity domain › DNA methylase specificity domain › DNA methylase specificity domain › Methylase_S | 0.76 | 68.0 | 4.63e-01 | 100.0% | 29.6% |
| 3965201 | 4333.1.1.1 ↗ | a+b complex topology › DNA methylase specificity domain › DNA methylase specificity domain › DNA methylase specificity domain › Methylase_S | 0.76 | 66.0 | 6.08e-01 | 100.0% | 73.3% |
| 4478617 | 4333.1.1.1 ↗ | a+b complex topology › DNA methylase specificity domain › DNA methylase specificity domain › DNA methylase specificity domain › Methylase_S | 0.76 | 50.0 | 5.02e-01 | 73.3% | 65.2% |
| 4598582 | 4333.1.1.1 ↗ | a+b complex topology › DNA methylase specificity domain › DNA methylase specificity domain › DNA methylase specificity domain › Methylase_S | 0.74 | 69.0 | 4.84e-01 | 100.0% | 34.1% |
| 5039257 | 4333.1.1.1 ↗ | a+b complex topology › DNA methylase specificity domain › DNA methylase specificity domain › DNA methylase specificity domain › Methylase_S | 0.73 | 68.0 | 5.78e-01 | 100.0% | 68.8% |
| 185520 | 4333.1.1.5 ↗ | a+b complex topology › DNA methylase specificity domain › DNA methylase specificity domain › DNA methylase specificity domain › BpuSI_TRD | 0.73 | 67.0 | 5.07e-01 | 100.0% | 67.9% |
| 3964644 | 4333.1.1.1 ↗ | a+b complex topology › DNA methylase specificity domain › DNA methylase specificity domain › DNA methylase specificity domain › Methylase_S | 0.73 | 68.0 | 5.91e-01 | 100.0% | 71.1% |
| 4315663 | 4333.1.1.1 ↗ | a+b complex topology › DNA methylase specificity domain › DNA methylase specificity domain › DNA methylase specificity domain › Methylase_S | 0.72 | 66.0 | 4.64e-01 | 100.0% | 38.2% |
| 5019092 | 4333.1.1.1 ↗ | a+b complex topology › DNA methylase specificity domain › DNA methylase specificity domain › DNA methylase specificity domain › Methylase_S | 0.72 | 66.0 | 5.86e-01 | 100.0% | 71.9% |
| 5019246 | 4333.1.1.1 ↗ | a+b complex topology › DNA methylase specificity domain › DNA methylase specificity domain › DNA methylase specificity domain › Methylase_S | 0.71 | 65.0 | 5.77e-01 | 100.0% | 74.6% |
| 3973577 | 4333.1.1.0 ↗ | a+b complex topology › DNA methylase specificity domain › DNA methylase specificity domain › DNA methylase specificity domain | 0.71 | 64.0 | 4.41e-01 | 95.4% | 33.3% |
| 4930116 | 4333.1.1.1 ↗ | a+b complex topology › DNA methylase specificity domain › DNA methylase specificity domain › DNA methylase specificity domain › Methylase_S | 0.70 | 64.0 | 5.38e-01 | 100.0% | 67.9% |
| 5059847 | 4333.1.1.1 ↗ | a+b complex topology › DNA methylase specificity domain › DNA methylase specificity domain › DNA methylase specificity domain › Methylase_S | 0.69 | 63.0 | 5.87e-01 | 98.5% | 82.4% |
| 3988205 | 4333.1.1.1 ↗ | a+b complex topology › DNA methylase specificity domain › DNA methylase specificity domain › DNA methylase specificity domain › Methylase_S | 0.68 | 63.0 | 5.42e-01 | 100.0% | 67.0% |
| 4675695 | 4333.1.1.1 ↗ | a+b complex topology › DNA methylase specificity domain › DNA methylase specificity domain › DNA methylase specificity domain › Methylase_S | 0.68 | 62.0 | 5.19e-01 | 100.0% | 66.7% |
| 5002947 | 4333.1.1.1 ↗ | a+b complex topology › DNA methylase specificity domain › DNA methylase specificity domain › DNA methylase specificity domain › Methylase_S | 0.68 | 63.0 | 4.20e-01 | 98.5% | 28.1% |
| 4998597 | 4333.1.1.1 ↗ | a+b complex topology › DNA methylase specificity domain › DNA methylase specificity domain › DNA methylase specificity domain › Methylase_S | 0.66 | 61.0 | 5.39e-01 | 100.0% | 74.1% |
D2
medium
residues 158-169_223-314
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01420.26 best | Methylase_S | 22.1 | 2.10e-04 | 90.4% | 56.0% |
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1ydxA03 | 3.90.220.20 | Alpha Beta › Alpha-Beta Complex › Adenine-n6-DNA-methyltransferase TaqI; Chain A, domain 2 › DNA methylase specificity domains | 0.76 | 56.0 | 4.99e-01 | 76.9% | 88.2% |
| 7btoI01 | 3.90.220.20 | Alpha Beta › Alpha-Beta Complex › Adenine-n6-DNA-methyltransferase TaqI; Chain A, domain 2 › DNA methylase specificity domains | 0.71 | 60.0 | 5.25e-01 | 92.3% | 98.1% |
| 3rklA00 | 6.10.140.1640 | Special › Helix non-globular › Helix Hairpins › | 0.59 | 30.0 | 3.38e-01 | 79.8% | 62.5% |
| 2dawA01 | 3.10.110.10 | Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme | 0.56 | 40.0 | 3.67e-01 | 74.0% | 57.9% |
ECOD (11)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4157881 | 4333.1.1.1 ↗ | a+b complex topology › DNA methylase specificity domain › DNA methylase specificity domain › DNA methylase specificity domain › Methylase_S | 0.96 | 90.0 | 7.38e-01 | 97.1% | 90.6% |
| 4279553 | 4333.1.1.1 ↗ | a+b complex topology › DNA methylase specificity domain › DNA methylase specificity domain › DNA methylase specificity domain › Methylase_S | 0.93 | 90.0 | 7.52e-01 | 100.0% | 98.8% |
| 3964430 | 4333.1.1.1 ↗ | a+b complex topology › DNA methylase specificity domain › DNA methylase specificity domain › DNA methylase specificity domain › Methylase_S | 0.83 | 74.0 | 6.29e-01 | 94.2% | 98.1% |
| 3964449 | 4333.1.1.1 ↗ | a+b complex topology › DNA methylase specificity domain › DNA methylase specificity domain › DNA methylase specificity domain › Methylase_S | 0.78 | 67.0 | 5.96e-01 | 89.4% | 100.0% |
| 5019928 | 4333.1.1.1 ↗ | a+b complex topology › DNA methylase specificity domain › DNA methylase specificity domain › DNA methylase specificity domain › Methylase_S | 0.68 | 57.0 | 4.02e-01 | 92.3% | 31.5% |
| 3904472 | 216.1.1.4 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › RWD | 0.59 | 40.0 | 3.99e-01 | 70.2% | 67.3% |
| 3712602 | 216.1.1.4 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › RWD | 0.57 | 40.0 | 3.70e-01 | 72.1% | 60.0% |
| 3740252 | 216.1.1.4 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › RWD | 0.56 | 44.0 | 4.26e-01 | 86.5% | 76.5% |
| 4429780 | 306.2.1.2 ↗ | a+b two layers › Glucose permease domain IIB-like › arginine repressor C terminal domain-related › C-terminal domain of arginine repressor › FlgI | 0.55 | 42.0 | 4.54e-01 | 82.7% | 100.0% |
| 5050683 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.53 | 39.0 | 3.73e-01 | 77.9% | 95.2% |
| 3820181 | 216.1.1.4 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › RWD | 0.50 | 36.0 | 3.34e-01 | 75.0% | 63.7% |
D3
medium
residues 170-222
Domain cluster:
representative
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1ydxA03 | 3.90.220.20 | Alpha Beta › Alpha-Beta Complex › Adenine-n6-DNA-methyltransferase TaqI; Chain A, domain 2 › DNA methylase specificity domains | 0.80 | 68.0 | 4.89e-01 | 100.0% | 34.7% |
ECOD (8)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4157881 | 4333.1.1.1 ↗ | a+b complex topology › DNA methylase specificity domain › DNA methylase specificity domain › DNA methylase specificity domain › Methylase_S | 0.94 | 88.0 | 5.92e-01 | 100.0% | 31.2% |
| 3964449 | 4333.1.1.1 ↗ | a+b complex topology › DNA methylase specificity domain › DNA methylase specificity domain › DNA methylase specificity domain › Methylase_S | 0.91 | 84.0 | 5.99e-01 | 100.0% | 40.7% |
| 4093841 | 4333.1.1.1 ↗ | a+b complex topology › DNA methylase specificity domain › DNA methylase specificity domain › DNA methylase specificity domain › Methylase_S | 0.85 | 77.0 | 4.98e-01 | 100.0% | 24.2% |
| 4279553 | 4333.1.1.1 ↗ | a+b complex topology › DNA methylase specificity domain › DNA methylase specificity domain › DNA methylase specificity domain › Methylase_S | 0.83 | 75.0 | 5.22e-01 | 100.0% | 35.0% |
| 3839864 | 4333.1.1.1 ↗ | a+b complex topology › DNA methylase specificity domain › DNA methylase specificity domain › DNA methylase specificity domain › Methylase_S | 0.82 | 72.0 | 4.28e-01 | 100.0% | 13.8% |
| 3838563 | 4333.1.1.1 ↗ | a+b complex topology › DNA methylase specificity domain › DNA methylase specificity domain › DNA methylase specificity domain › Methylase_S | 0.80 | 73.0 | 4.20e-01 | 100.0% | 13.3% |
| 3163610 | 4333.1.1.1 ↗ | a+b complex topology › DNA methylase specificity domain › DNA methylase specificity domain › DNA methylase specificity domain › Methylase_S | 0.78 | 71.0 | 4.18e-01 | 100.0% | 14.9% |
| 4032878 | 4333.1.1.1 ↗ | a+b complex topology › DNA methylase specificity domain › DNA methylase specificity domain › DNA methylase specificity domain › Methylase_S | 0.77 | 71.0 | 4.73e-01 | 100.0% | 29.7% |