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term4_saliva_scaffold_5_prodigal-single.1__X__X__00113

Bact-Vir

term4_saliva_scaffold_5_prodigal-single.1__X__X__00113

Identity

Kingdom:
phage

Quality

47.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 8-78
PDB
Domain cluster: representative
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3axsA02 3.30.56.70 Alpha Beta › 2-Layer Sandwich › Phenylalanyl-tRNA Synthetase; Chain B, domain 1 › N2,N2-dimethylguanosine tRNA methyltransferase, C-terminal domain 0.60 43.0 4.53e-01 91.5% 84.6%
3iwaA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.57 45.0 3.58e-01 90.1% 91.1%
1u9jA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.55 47.0 3.34e-01 100.0% 84.0%
1xjuA00 1.10.530.40 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.54 44.0 3.48e-01 97.2% 41.7%
3j7aY00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 37.0 2.99e-01 74.6% 88.3%
1kblA05 1.20.80.30 Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein › 0.53 38.0 3.66e-01 80.3% 65.2%
5xzwA02 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.53 38.0 3.08e-01 100.0% 37.9%
2e9hA01 3.30.30.170 Alpha Beta › 2-Layer Sandwich › Defensin A-like › 0.52 40.0 3.48e-01 90.1% 53.1%
2q07A02 3.10.450.90 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › ArcTGT, C2 domain 0.52 40.0 4.13e-01 98.6% 90.8%
2hoxA03 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.52 39.0 3.48e-01 84.5% 88.5%
1z1nX02 3.90.10.10 Alpha Beta › Alpha-Beta Complex › Cytochrome C3 › Cytochrome C3 0.51 37.0 3.24e-01 78.9% 70.9%
2kkhA01 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 40.0 3.95e-01 90.1% 82.7%
2dy1A03 3.30.70.870 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation Factor G (Translational Gtpase), domain 3 0.50 38.0 3.74e-01 91.5% 76.3%
3u37A02 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.50 40.0 2.92e-01 95.8% 95.2%
ECOD (21)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4821450 242.1.1.7 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 0.59 36.0 3.87e-01 70.4% 72.9%
4582078 181.1.1.0 ↗ alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins 0.58 39.0 4.36e-01 91.5% 100.0%
4417105 2004.1.1.77 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF87,HerA_C 0.58 44.0 2.76e-01 83.1% 83.2%
151381 604.16.1.2 ↗ alpha bundles › Spectrin repeat-like › Hypothetical membrane protein Ta0354, soluble domain › Hypothetical membrane protein Ta0354, soluble domain › VWA_3_C 0.58 38.0 4.27e-01 100.0% 92.5%
3391391 4177.1.1.16 ↗ alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › FAP206 0.57 49.0 3.21e-01 100.0% 23.0%
3739073 376.1.1.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.56 31.0 2.82e-01 98.6% 38.0%
3474848 261.1.1.0 ↗ a+b complex topology › Hect, E3 ligase catalytic domain › Hect, E3 ligase catalytic domain › Hect, E3 ligase catalytic domain 0.55 38.0 2.34e-01 71.8% 15.9%
3286527 601.4.1.2 ↗ alpha bundles › Four-helical up-and-down bundle › Histidine kinase associated sensor domains › Histidine kinase associated sensor domains › NIT 0.54 38.0 2.61e-01 74.6% 84.6%
4984579 2004.1.1.42 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE 0.54 46.0 2.86e-01 98.6% 44.5%
3924659 5001.1.1.1 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.53 40.0 2.71e-01 87.3% 61.6%
3685669 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.52 37.0 2.98e-01 76.1% 73.5%
3272518 2498.1.1.92 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › DUF7906 0.52 43.0 3.13e-01 98.6% 85.8%
4162127 320.4.1.8 ↗ a+b two layers › R3H domain-like › PUB domain › PUB domain › PF27588 0.52 43.0 3.29e-01 90.1% 43.8%
3710958 1128.1.1.0 ↗ alpha bundles › LYR protein › LYR protein › LYR protein 0.52 44.0 4.09e-01 100.0% 93.7%
3601098 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.51 36.0 3.42e-01 77.5% 68.4%
3709611 5073.1.1.7 ↗ alpha bundles › Calcium ATPase transmembrane domain-related › Calcium ATPase transmembrane domain-related › Calcium ATPase transmembrane domain M › PhoLip_ATPase_C 0.51 42.0 2.75e-01 97.2% 32.5%
5050281 304.120.1.0 ↗ a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI 0.51 41.0 3.99e-01 90.1% 90.0%
3782917 109.4.1.1289 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF30856 0.51 35.0 2.24e-01 73.2% 17.7%
3703451 101.1.15.0 ↗ alpha arrays › HTH › HTH › HAT1, C-terminal domain 0.50 38.0 3.54e-01 81.7% 73.3%
3717340 605.1.1.155 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › Gpi1 0.50 41.0 3.01e-01 91.5% 84.5%
4977858 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.50 40.0 3.66e-01 97.2% 63.8%
D2 high residues 113-232
PDB