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term4_saliva_scaffold_5_prodigal-single.1__X__X__00116

Bact-Vir

term4_saliva_scaffold_5_prodigal-single.1__X__X__00116

Identity

Kingdom:
phage

Quality

82.9 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-99
PDB
CATH (49)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4i8oA02 3.30.160.690 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Bacterial toxin RNase RnlA/LsoA, N repeated domain 0.72 58.0 5.92e-01 100.0% 90.0%
4ktpA01 2.70.98.40 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Glycoside hydrolase, family 65, N-terminal domain 0.69 53.0 3.87e-01 81.9% 44.4%
3tfzB00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.69 61.0 5.09e-01 100.0% 86.7%
6xrbA01 3.40.1000.10 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich 0.68 51.0 4.52e-01 79.8% 63.3%
2v8qA01 3.30.310.80 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 0.68 58.0 6.01e-01 98.9% 100.0%
3q63F00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.68 61.0 5.37e-01 100.0% 88.5%
3w9kA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.68 60.0 5.38e-01 100.0% 85.9%
2hzmG01 3.30.310.180 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › 0.67 55.0 5.18e-01 100.0% 73.9%
4l9cA00 3.40.1000.30 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › 0.67 54.0 4.56e-01 85.1% 88.7%
7szeB02 3.90.380.10 Alpha Beta › Alpha-Beta Complex › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 0.67 60.0 4.84e-01 100.0% 73.9%
3t4nA01 3.30.310.80 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 0.66 59.0 5.87e-01 96.8% 93.8%
4exrA01 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.66 44.0 4.67e-01 73.4% 77.8%
2ldkA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.66 59.0 4.87e-01 100.0% 82.6%
8es5A01 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.66 59.0 5.20e-01 100.0% 86.2%
3en8A01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.65 45.0 4.28e-01 71.3% 92.0%
4r80A00 3.10.450.630 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.65 43.0 4.72e-01 71.3% 84.2%
3ijtB00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.65 57.0 5.02e-01 100.0% 87.4%
1vr8A00 3.40.1000.20 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › TM1622-like 0.64 57.0 5.03e-01 96.8% 93.3%
4lmiB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.63 44.0 3.91e-01 72.3% 76.5%
3fo5B00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.63 55.0 4.22e-01 100.0% 64.8%
1mhmA00 3.60.90.10 Alpha Beta › 4-Layer Sandwich › S-adenosylmethionine decarboxylase › S-adenosylmethionine decarboxylase 0.63 56.0 4.13e-01 100.0% 38.7%
1mdcA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.62 48.0 4.33e-01 81.9% 83.2%
6v04A01 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.62 54.0 4.97e-01 100.0% 92.9%
3pu2B00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.61 54.0 4.62e-01 100.0% 86.3%
4exrA02 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.61 38.0 4.33e-01 71.3% 84.5%
3blcA00 2.70.98.90 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.60 50.0 3.61e-01 91.5% 74.6%
2ykfA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.60 47.0 4.08e-01 84.0% 76.7%
5tvfD00 3.60.90.10 Alpha Beta › 4-Layer Sandwich › S-adenosylmethionine decarboxylase › S-adenosylmethionine decarboxylase 0.60 53.0 3.85e-01 100.0% 38.1%
7ne4A01 2.130.10.120 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain 0.60 42.0 2.90e-01 73.4% 26.1%
2ffsA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.59 52.0 4.55e-01 100.0% 91.7%
2kd2A01 2.40.128.180 Mainly Beta › Beta Barrel › Lipocalin › 0.59 48.0 5.05e-01 95.7% 97.6%
1jy1A01 3.30.870.10 Alpha Beta › 2-Layer Sandwich › Endonuclease; Chain A › Endonuclease Chain A 0.58 45.0 3.50e-01 81.9% 70.0%
4akmB00 2.40.160.110 Mainly Beta › Beta Barrel › Porin › 0.58 49.0 4.14e-01 91.5% 89.2%
6zhhA01 3.40.1110.10 Alpha Beta › 3-Layer(aba) Sandwich › Calcium-transporting ATPase, cytoplasmic domain N › Calcium-transporting ATPase, cytoplasmic domain N 0.58 42.0 3.45e-01 77.7% 83.9%
3a57A00 2.60.270.30 Mainly Beta › Sandwich › Mutm (Fpg) Protein; Chain: A, domain 2 › Vibrio parahaemolyticus thermostable direct hemolysin 0.57 48.0 4.10e-01 91.5% 97.4%
4uv3E01 3.40.50.10610 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ABC-type transport auxiliary lipoprotein component 0.57 45.0 3.56e-01 86.2% 89.2%
2plgA01 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.57 48.0 4.26e-01 91.5% 86.4%
1ry9A00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.57 42.0 3.79e-01 100.0% 56.4%
2dc0A00 3.90.1300.10 Alpha Beta › Alpha-Beta Complex › Amidase signature (AS) enzymes › Amidase signature (AS) domain 0.56 49.0 3.19e-01 96.8% 48.4%
2v7sA00 3.30.2030.20 Alpha Beta › 2-Layer Sandwich › TBP-like › 0.56 44.0 3.71e-01 86.2% 57.4%
3wirA01 2.70.98.40 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Glycoside hydrolase, family 65, N-terminal domain 0.56 46.0 3.47e-01 92.6% 76.1%
2bkkA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.56 38.0 3.94e-01 70.2% 98.9%
3bghB01 3.30.160.180 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Putative neuraminyllactose-binding hemagglutinin homolog like domain 0.56 41.0 3.43e-01 77.7% 85.4%
3p0lD00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.54 46.0 3.82e-01 100.0% 89.2%
3mswA00 2.40.128.720 Mainly Beta › Beta Barrel › Lipocalin › 0.54 40.0 3.51e-01 78.7% 72.7%
4h5bA00 3.30.1460.70 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.53 43.0 3.69e-01 88.3% 95.4%
4aghA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.53 31.0 3.33e-01 70.2% 66.3%
5ctnA00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.52 39.0 2.97e-01 79.8% 84.1%
2dx0B01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.52 33.0 3.65e-01 77.7% 81.3%
ECOD (54)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5004346 331.19.1.0 a+b two layers › TBP-like › Toxin RnlA N-terminal domains › Toxin RnlA N-terminal domains 0.82 61.0 6.39e-01 92.6% 84.7%
3513651 331.9.1.8 a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain › AP3B1_C_2 0.72 59.0 5.59e-01 96.8% 75.5%
3451705 331.4.1.2 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › NAF 0.71 61.0 5.31e-01 100.0% 62.1%
4216985 331.19.1.2 a+b two layers › TBP-like › Toxin RnlA N-terminal domains › Toxin RnlA N-terminal domains › RnlA_toxin_N 0.71 56.0 5.86e-01 98.9% 92.9%
3677415 331.4.1.2 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › NAF 0.71 62.0 5.72e-01 100.0% 75.8%
3663339 331.4.1.7 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › DUF1499 0.70 63.0 5.33e-01 100.0% 79.4%
3438388 331.4.1.2 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › NAF 0.70 60.0 5.36e-01 100.0% 66.7%
4970968 331.10.2.0 a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase 0.69 63.0 5.94e-01 100.0% 88.5%
3579622 331.4.1.0 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.69 59.0 5.60e-01 100.0% 80.9%
3392728 331.9.1.8 a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain › AP3B1_C_2 0.69 58.0 5.32e-01 100.0% 70.4%
3282063 331.3.1.11 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc2 0.68 58.0 5.25e-01 92.6% 88.8%
4964630 331.3.1.11 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc2 0.68 61.0 5.31e-01 100.0% 88.8%
4928697 331.3.1.0 a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.67 60.0 5.44e-01 100.0% 89.9%
4974181 331.3.1.74 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › PF27226 0.67 51.0 5.02e-01 80.9% 80.8%
3279524 331.3.1.9 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › AHSA1 0.66 60.0 5.09e-01 100.0% 81.3%
4470525 331.3.1.20 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › KshA_C 0.66 60.0 4.41e-01 100.0% 59.6%
1170463 243.3.1.3 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › PepSY 0.66 44.0 4.46e-01 73.4% 69.2%
3599391 868.1.1.2 a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA_triPase 0.66 58.0 4.47e-01 100.0% 83.1%
5004871 331.4.1.0 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.66 54.0 5.51e-01 100.0% 93.3%
3283094 331.3.1.9 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › AHSA1 0.65 58.0 4.63e-01 100.0% 59.5%
5014277 274.1.1.0 a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.65 45.0 4.70e-01 76.6% 78.8%
4228206 708.1.1.0 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain 0.65 48.0 5.12e-01 77.7% 96.2%
370870 331.3.1.0 a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.65 57.0 5.09e-01 100.0% 91.2%
4033429 243.3.1.3 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › PepSY 0.64 42.0 4.52e-01 73.4% 78.8%
3854043 331.3.1.3 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › START 0.63 56.0 4.32e-01 100.0% 70.2%
3455612 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.62 45.0 2.94e-01 74.5% 32.3%
3260335 5.1.4.14 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Peptidase_S9_N 0.62 44.0 2.92e-01 73.4% 27.0%
3599747 5.1.5.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.62 43.0 2.89e-01 72.3% 22.1%
3965259 243.3.1.16 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › PepSY_2 0.61 38.0 4.20e-01 71.3% 79.7%
1170462 243.3.1.3 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › PepSY 0.61 38.0 4.58e-01 71.3% 98.4%
4025955 5.1.4.271 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, PF30361 0.61 42.0 2.72e-01 71.3% 26.0%
4231782 206.1.1.11 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › APH 0.60 41.0 2.82e-01 70.2% 30.6%
3416070 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.59 42.0 2.84e-01 74.5% 22.0%
4972317 206.1.1.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.59 41.0 3.05e-01 72.3% 34.9%
4108772 243.3.1.10 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › YPEB_PepSY1-2 0.59 42.0 4.59e-01 78.7% 92.0%
3695943 12.3.1.0 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich 0.59 50.0 3.53e-01 92.6% 75.5%
3588678 243.3.1.3 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › PepSY 0.59 38.0 4.40e-01 70.2% 95.4%
3199763 220.1.1.202 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_FT_N 0.58 42.0 3.85e-01 76.6% 90.4%
3209928 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.58 40.0 2.59e-01 73.4% 21.6%
3247031 708.1.1.0 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain 0.58 44.0 4.29e-01 83.0% 94.3%
3519601 216.1.1.0 a+b two layers › UBC-like › UBC-like › UBC-like 0.57 49.0 4.56e-01 93.6% 80.8%
3685284 206.1.1.15 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Fructosamin_kin 0.57 39.0 2.67e-01 71.3% 71.0%
3256082 220.1.1.153 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_TRF2_HOY1 0.56 45.0 3.92e-01 86.2% 69.7%
3238801 2484.1.1.200 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FTH 0.56 40.0 2.58e-01 74.5% 20.2%
3575893 3459.1.1.1 beta sandwiches › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › FAIM1 0.55 45.0 4.50e-01 94.7% 86.3%
3856809 4099.1.1.0 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.54 43.0 4.45e-01 90.4% 91.1%
4019954 5.1.4.169 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_RSE1_2nd 0.53 41.0 2.74e-01 83.0% 88.2%
3695635 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.52 36.0 3.70e-01 71.3% 78.9%
3882543 243.3.1.4 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › Latexin_N 0.52 38.0 3.84e-01 77.7% 91.6%
3367922 304.8.1.45 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › bHLH-TF_ACT-like_plant 0.52 43.0 4.32e-01 100.0% 90.5%
3846156 10.1.1.17 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.51 44.0 3.55e-01 96.8% 69.5%
5017353 218.4.1.1 a+b two layers › Enolase-N/ribosomal protein › Dhaf4260 N-terminal domain › Dhaf4260 N-terminal domain › DUF4213 0.51 41.0 4.11e-01 86.2% 98.9%
3969507 206.1.1.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.51 35.0 2.60e-01 89.4% 25.7%
5062640 206.1.1.11 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › APH 0.50 45.0 3.17e-01 100.0% 60.3%