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term4_saliva_scaffold_5_prodigal-single.1__X__X__00139

Bact-Vir

term4_saliva_scaffold_5_prodigal-single.1__X__X__00139

Identity

Kingdom:
phage

Quality

73.8 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 49-111
PDB
Domain cluster: representative
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2mpkA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.72 58.0 5.57e-01 90.5% 82.4%
1x4tA01 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.71 56.0 5.81e-01 100.0% 96.6%
ECOD (8)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3600869 3567.1.1.0 ↗ a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer 0.81 73.0 5.95e-01 100.0% 67.0%
3410128 5041.1.1.0 ↗ extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C 0.76 66.0 6.55e-01 100.0% 98.5%
3901145 109.4.1.1350 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › STAG, SCD, HEAT_SCC3-SA, PF31007 0.74 60.0 3.31e-01 93.7% 5.6%
4669204 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.68 61.0 3.63e-01 100.0% 16.0%
3706614 603.1.1.0 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.67 56.0 4.60e-01 92.1% 54.8%
4978829 150.5.1.0 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like 0.67 58.0 5.62e-01 100.0% 87.1%
5032905 150.5.1.0 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like 0.60 42.0 4.06e-01 85.7% 65.7%
4927405 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.53 44.0 3.40e-01 93.7% 73.3%