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term4_saliva_scaffold_5_prodigal-single.1__X__X__00199
Bact-Virterm4_saliva_scaffold_5_prodigal-single.1__X__X__00199
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 11-103
Domain cluster:
representative
CATH (15)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2qv8A00 | 3.55.40.10 | Alpha Beta › 3-Layer(bab) Sandwich › minor pseudopilin epsh fold › minor pseudopilin epsh domain | 0.64 | 54.0 | 4.74e-01 | 93.5% | 96.5% |
| 4ifdI02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.60 | 49.0 | 4.25e-01 | 88.2% | 71.5% |
| 1rjbA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.58 | 29.0 | 2.74e-01 | 100.0% | 36.4% |
| 1ou8A00 | 2.30.30.220 | Mainly Beta › Roll › SH3 type barrels. › SspB-like | 0.56 | 40.0 | 3.89e-01 | 98.9% | 66.0% |
| 1sxjH01 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.55 | 48.0 | 4.46e-01 | 100.0% | 93.5% |
| 2ix2B00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.55 | 48.0 | 3.62e-01 | 100.0% | 45.7% |
| 1mc0A01 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.54 | 38.0 | 3.21e-01 | 74.2% | 49.4% |
| 3ecrB03 | 3.30.160.40 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Porphobilinogen deaminase, C-terminal domain | 0.54 | 37.0 | 3.63e-01 | 88.2% | 65.7% |
| 6kjhA01 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.53 | 44.0 | 3.00e-01 | 91.4% | 73.9% |
| 3qr8A01 | 2.40.50.230 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Gp5 N-terminal domain | 0.52 | 38.0 | 3.97e-01 | 86.0% | 86.9% |
| 3lidA02 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.52 | 37.0 | 3.32e-01 | 74.2% | 58.2% |
| 3w2zA00 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.52 | 39.0 | 3.17e-01 | 79.6% | 51.7% |
| 2lssA00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.52 | 36.0 | 4.02e-01 | 90.3% | 98.6% |
| 4bwiB01 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.51 | 40.0 | 3.19e-01 | 97.8% | 40.6% |
| 4bkwA03 | 3.30.500.40 | Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › | 0.51 | 38.0 | 3.56e-01 | 86.0% | 60.3% |
ECOD (19)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3255991 | 601.23.1.4 ↗ | alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › MutS_IV, MutS_III | 0.61 | 42.0 | 2.92e-01 | 72.0% | 34.2% |
| 3503503 | 227.1.1.12 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 | 0.61 | 54.0 | 4.69e-01 | 100.0% | 92.4% |
| 3471644 | 223.1.1.3 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › GAF | 0.56 | 39.0 | 2.56e-01 | 72.0% | 78.1% |
| 5057061 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.56 | 38.0 | 4.25e-01 | 96.8% | 95.7% |
| 4646871 | 227.1.1.6 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C | 0.55 | 46.0 | 4.23e-01 | 95.7% | 70.4% |
| 5027788 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.54 | 37.0 | 3.75e-01 | 88.2% | 71.0% |
| 3534499 | 227.1.1.12 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 | 0.54 | 46.0 | 4.07e-01 | 100.0% | 93.8% |
| 3416726 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.54 | 45.0 | 4.21e-01 | 93.5% | 85.2% |
| 162047 | 227.1.1.1 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N | 0.53 | 45.0 | 4.15e-01 | 97.8% | 71.7% |
| 4941928 | 227.1.1.1 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N | 0.53 | 44.0 | 4.08e-01 | 94.6% | 90.8% |
| 3307643 | 2.1.1.7 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 | 0.52 | 42.0 | 4.33e-01 | 98.9% | 91.1% |
| 4952199 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.52 | 37.0 | 2.92e-01 | 75.3% | 53.5% |
| 5061315 | 223.1.1.13 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 | 0.52 | 37.0 | 2.61e-01 | 100.0% | 22.9% |
| 5072620 | 512.1.1.2 ↗ | a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_2nd | 0.51 | 45.0 | 3.50e-01 | 97.8% | 73.3% |
| 5070586 | 227.1.1.1 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N | 0.51 | 44.0 | 4.02e-01 | 97.8% | 72.0% |
| 5052550 | 227.1.1.1 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N | 0.51 | 43.0 | 4.01e-01 | 97.8% | 72.0% |
| 1271913 | 223.1.1.3 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › GAF | 0.51 | 40.0 | 3.24e-01 | 97.8% | 42.9% |
| 3625309 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.51 | 40.0 | 3.69e-01 | 86.0% | 65.0% |
| 3331552 | 10.1.1.58 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Neprosin | 0.50 | 37.0 | 2.79e-01 | 80.6% | 82.3% |