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term4_saliva_scaffold_5_prodigal-single.1__X__X__00239
Bact-Virterm4_saliva_scaffold_5_prodigal-single.1__X__X__00239
Identity
- Kingdom:
- phage
Quality
84.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 7-84
Domain cluster:
representative
CATH (26)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2l3rA02 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.70 | 48.0 | 4.95e-01 | 70.5% | 80.8% |
| 2hx0A01 | 3.30.1330.80 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 | 0.64 | 44.0 | 3.69e-01 | 70.5% | 50.0% |
| 5ycqA00 | 2.30.30.390 | Mainly Beta › Roll › SH3 type barrels. › Hemimethylated DNA-binding domain | 0.64 | 44.0 | 4.49e-01 | 78.2% | 74.0% |
| 7k98B01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.63 | 50.0 | 4.43e-01 | 85.9% | 98.2% |
| 1x6oA02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.63 | 43.0 | 4.33e-01 | 71.8% | 97.5% |
| 3hwuA00 | 3.30.1330.80 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 | 0.62 | 42.0 | 3.49e-01 | 70.5% | 48.6% |
| 1xjvA01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.62 | 46.0 | 3.79e-01 | 79.5% | 80.3% |
| 5gvyA00 | 2.100.10.30 | Mainly Beta › Aligned Prism › Vitelline Membrane Outer Layer Protein I, subunit A › Jacalin-like lectin domain | 0.61 | 43.0 | 3.53e-01 | 74.4% | 98.6% |
| 3k59A01 | 2.40.50.590 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › DNA polymerase B, N domain, beta-barrel | 0.61 | 42.0 | 4.17e-01 | 73.1% | 95.3% |
| 2eyqA05 | 2.40.10.170 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.59 | 41.0 | 4.52e-01 | 76.9% | 96.6% |
| 4bwgD00 | 2.40.50.110 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.59 | 45.0 | 4.20e-01 | 82.1% | 100.0% |
| 1a31A03 | 3.90.15.10 | Alpha Beta › Alpha-Beta Complex › Topoisomerase I; Chain A, domain 3 › Topoisomerase I; Chain A, domain 3 | 0.58 | 48.0 | 4.03e-01 | 97.4% | 71.3% |
| 2gfuA00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.57 | 45.0 | 3.87e-01 | 88.5% | 55.2% |
| 3askA02 | 2.30.30.1150 | Mainly Beta › Roll › SH3 type barrels. › | 0.57 | 51.0 | 4.10e-01 | 100.0% | 70.9% |
| 2lt1A00 | 2.40.10.170 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.55 | 39.0 | 4.03e-01 | 80.8% | 78.7% |
| 2uvaG09 | 2.40.128.700 | Mainly Beta › Beta Barrel › Lipocalin › | 0.55 | 37.0 | 3.33e-01 | 70.5% | 85.3% |
| 3mx7A00 | 2.40.128.180 | Mainly Beta › Beta Barrel › Lipocalin › | 0.54 | 31.0 | 3.00e-01 | 80.8% | 47.8% |
| 2wuqB00 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.54 | 47.0 | 3.21e-01 | 96.2% | 92.2% |
| 1u9tA01 | 3.40.1570.10 | Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › HemS/ChuS/ChuX like domains | 0.54 | 36.0 | 2.95e-01 | 70.5% | 48.1% |
| 2q0oA01 | 3.30.450.80 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain | 0.53 | 46.0 | 3.71e-01 | 100.0% | 98.8% |
| 3go2A01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.52 | 38.0 | 3.41e-01 | 76.9% | 58.8% |
| 2lqkA00 | 2.40.10.170 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.52 | 36.0 | 3.73e-01 | 79.5% | 81.4% |
| 5oomJ01 | 3.30.1550.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal protein L11, N-terminal domain › Ribosomal protein L11/L12, N-terminal domain | 0.51 | 28.0 | 3.01e-01 | 93.6% | 60.6% |
| 5ch5A00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.51 | 39.0 | 2.36e-01 | 100.0% | 11.5% |
| 2i87B02 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.51 | 46.0 | 3.61e-01 | 100.0% | 75.5% |
| 2jz4A01 | 2.100.10.30 | Mainly Beta › Aligned Prism › Vitelline Membrane Outer Layer Protein I, subunit A › Jacalin-like lectin domain | 0.51 | 34.0 | 2.86e-01 | 70.5% | 80.4% |
ECOD (30)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4414198 | 4111.1.1.2 ↗ | a+b two layers › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › PCC | 0.66 | 45.0 | 3.69e-01 | 70.5% | 47.1% |
| 3645842 | 4.1.1.162 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF502 | 0.63 | 50.0 | 5.05e-01 | 88.5% | 92.5% |
| 3676628 | 4.1.1.162 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF502 | 0.63 | 50.0 | 4.38e-01 | 88.5% | 65.8% |
| 4051081 | 4.1.1.32 ↗ | beta barrels › SH3 › SH3 › SH3 › CarD_TRCF_RID | 0.63 | 41.0 | 4.55e-01 | 70.5% | 88.3% |
| 4983382 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.62 | 42.0 | 3.56e-01 | 70.5% | 70.0% |
| 3260945 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.61 | 43.0 | 4.75e-01 | 73.1% | 96.7% |
| 4995707 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.60 | 42.0 | 3.91e-01 | 79.5% | 57.0% |
| 4423306 | 4.1.1.32 ↗ | beta barrels › SH3 › SH3 › SH3 › CarD_TRCF_RID | 0.60 | 43.0 | 4.36e-01 | 82.1% | 78.7% |
| 3974490 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.60 | 47.0 | 4.74e-01 | 89.7% | 93.8% |
| 3439990 | 220.1.1.76 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 | 0.60 | 41.0 | 3.94e-01 | 71.8% | 80.0% |
| 4963445 | 4.1.1.162 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF502 | 0.60 | 47.0 | 4.62e-01 | 88.5% | 95.3% |
| 169352 | 2.2.1.0 ↗ | beta barrels › OB-fold › Bacterial enterotoxins › Bacterial enterotoxins | 0.57 | 48.0 | 4.25e-01 | 96.2% | 98.3% |
| 4932378 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.56 | 36.0 | 3.93e-01 | 84.6% | 83.3% |
| 4339993 | 4.1.1.32 ↗ | beta barrels › SH3 › SH3 › SH3 › CarD_TRCF_RID | 0.56 | 41.0 | 3.98e-01 | 82.1% | 68.9% |
| 3241979 | 220.1.1.7 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › IRS | 0.56 | 38.0 | 3.53e-01 | 71.8% | 67.6% |
| 4335575 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.55 | 45.0 | 2.59e-01 | 93.6% | 9.1% |
| 4547406 | 4.1.1.32 ↗ | beta barrels › SH3 › SH3 › SH3 › CarD_TRCF_RID | 0.55 | 41.0 | 4.11e-01 | 85.9% | 78.8% |
| 4981192 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.54 | 44.0 | 3.14e-01 | 92.3% | 69.4% |
| 3839369 | 4.1.1.32 ↗ | beta barrels › SH3 › SH3 › SH3 › CarD_TRCF_RID | 0.54 | 40.0 | 4.03e-01 | 82.1% | 78.8% |
| 3507420 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.54 | 38.0 | 3.55e-01 | 71.8% | 92.6% |
| 3388362 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.54 | 44.0 | 2.62e-01 | 93.6% | 11.1% |
| 3951961 | 4.1.1.32 ↗ | beta barrels › SH3 › SH3 › SH3 › CarD_TRCF_RID | 0.52 | 42.0 | 4.02e-01 | 91.0% | 76.8% |
| 4988803 | 2484.1.1.34 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 | 0.52 | 46.0 | 2.94e-01 | 97.4% | 46.8% |
| 4077893 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.52 | 43.0 | 2.67e-01 | 94.9% | 14.7% |
| 3952939 | 220.1.1.82 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_6 | 0.52 | 36.0 | 3.67e-01 | 71.8% | 98.7% |
| 3219626 | 7579.1.1.89 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › COesterase, BD-FAE | 0.52 | 38.0 | 2.38e-01 | 80.8% | 75.2% |
| 4068131 | 4.1.1.32 ↗ | beta barrels › SH3 › SH3 › SH3 › CarD_TRCF_RID | 0.52 | 40.0 | 3.80e-01 | 91.0% | 70.5% |
| 3783958 | 9.16.1.4 ↗ | beta barrels › Lipocalins/Streptavidin › Hypothetical protein Atu4866 › Hypothetical protein Atu4866 › Rot1 | 0.51 | 35.0 | 2.83e-01 | 71.8% | 68.5% |
| None | — | 0.51 | 44.0 | 3.18e-01 | 97.4% | 56.6% | |
| 4155224 | 9.16.1.4 ↗ | beta barrels › Lipocalins/Streptavidin › Hypothetical protein Atu4866 › Hypothetical protein Atu4866 › Rot1 | 0.50 | 34.0 | 2.82e-01 | 71.8% | 71.2% |