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term6_saliva_scaffold_0_prodigal-single.1__X__X__00029
Bact-Virterm6_saliva_scaffold_0_prodigal-single.1__X__X__00029
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 8-133
Domain cluster:
representative
CATH (26)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3k2yA00 | 3.30.70.2330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.69 | 52.0 | 5.69e-01 | 100.0% | 98.1% |
| 1wosA04 | 2.40.30.110 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Aminomethyltransferase beta-barrel domains | 0.68 | 29.0 | 3.52e-01 | 96.0% | 58.1% |
| 4paaA05 | 2.40.30.110 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Aminomethyltransferase beta-barrel domains | 0.68 | 31.0 | 3.77e-01 | 96.0% | 65.8% |
| 3fawA01 | 2.60.40.1220 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.66 | 30.0 | 3.45e-01 | 92.9% | 56.5% |
| 2kviA00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.63 | 29.0 | 3.54e-01 | 95.2% | 67.5% |
| 2fgcA03 | 3.30.70.1150 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT-like. Chain A, domain 2 | 0.62 | 27.0 | 3.41e-01 | 96.8% | 65.8% |
| 1qupA01 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.61 | 29.0 | 3.75e-01 | 97.6% | 78.6% |
| 2gffA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.57 | 30.0 | 3.39e-01 | 94.4% | 65.6% |
| 2rhqB06 | 3.30.70.380 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ferrodoxin-fold anticodon-binding domain | 0.55 | 30.0 | 3.61e-01 | 94.4% | 80.7% |
| 2f1fA01 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.55 | 28.0 | 3.36e-01 | 99.2% | 74.7% |
| 2j0wA03 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.54 | 27.0 | 3.22e-01 | 96.8% | 70.4% |
| 3znuA00 | 3.30.70.1060 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Dimeric alpha+beta barrel | 0.53 | 30.0 | 3.35e-01 | 97.6% | 70.2% |
| 2jvzA01 | 3.30.1370.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 | 0.53 | 28.0 | 3.37e-01 | 94.4% | 77.5% |
| 2r4fA03 | 3.30.70.420 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Hydroxymethylglutaryl-CoA reductase, class I/II, NAD/NADP-binding domain | 0.53 | 33.0 | 3.42e-01 | 94.4% | 65.8% |
| 2ecuA00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.52 | 37.0 | 3.50e-01 | 97.6% | 60.4% |
| 4xhyA00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.51 | 38.0 | 3.53e-01 | 97.6% | 60.2% |
| 6k3lB02 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.51 | 26.0 | 3.06e-01 | 93.7% | 67.0% |
| 1uscA00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.51 | 38.0 | 3.44e-01 | 97.6% | 56.2% |
| 2qrrA00 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.51 | 27.0 | 3.06e-01 | 99.2% | 64.9% |
| 4ci2B02 | 2.30.130.40 | Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like | 0.51 | 36.0 | 3.66e-01 | 100.0% | 74.4% |
| 2qckA01 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.51 | 37.0 | 3.56e-01 | 97.6% | 64.2% |
| 8ct0B01 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.51 | 38.0 | 3.49e-01 | 96.8% | 59.6% |
| 2d37A00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.50 | 37.0 | 3.53e-01 | 97.6% | 63.2% |
| 4iqzA02 | 2.40.50.100 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | 0.50 | 36.0 | 3.98e-01 | 84.9% | 93.0% |
| 6jy5B00 | 2.40.50.220 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › EutN/Ccml | 0.50 | 31.0 | 3.69e-01 | 74.6% | 95.1% |
| 1rz1A00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.50 | 36.0 | 3.46e-01 | 96.8% | 62.5% |
ECOD (33)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3964731 | 304.3.1.1 ↗ | a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain › HMA | 0.70 | 32.0 | 3.62e-01 | 96.8% | 55.0% |
| 4974451 | 304.3.1.0 ↗ | a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain | 0.67 | 32.0 | 4.18e-01 | 96.0% | 81.4% |
| 3298896 | 304.3.1.1 ↗ | a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain › HMA | 0.67 | 30.0 | 3.95e-01 | 97.6% | 75.7% |
| 3557179 | 304.3.1.1 ↗ | a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain › HMA | 0.66 | 31.0 | 3.86e-01 | 96.0% | 71.2% |
| 4991065 | 304.4.1.1 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › AsnC_trans_reg | 0.65 | 31.0 | 3.71e-01 | 99.2% | 65.9% |
| 3587055 | 2.21.1.3 ↗ | beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) › HTH_OrfB_IS605 | 0.65 | 44.0 | 5.14e-01 | 96.0% | 97.8% |
| 4597943 | 2.21.1.0 ↗ | beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) | 0.64 | 51.0 | 4.92e-01 | 96.8% | 74.5% |
| 3463679 | 304.112.1.0 ↗ | a+b two layers › Alpha-beta plaits › Argonaute, N-terminal domain › Argonaute, N-terminal domain | 0.64 | 31.0 | 3.72e-01 | 97.6% | 67.1% |
| 4638448 | 1.1.7.9 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c | 0.64 | 31.0 | 3.39e-01 | 96.0% | 54.3% |
| 5074517 | 304.4.1.1 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › AsnC_trans_reg | 0.64 | 31.0 | 3.58e-01 | 96.0% | 63.3% |
| 4534160 | 304.4.1.1 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › AsnC_trans_reg | 0.63 | 31.0 | 3.68e-01 | 96.8% | 68.2% |
| 4557109 | 2.21.1.1 ↗ | beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) › SmpB | 0.63 | 51.0 | 4.88e-01 | 96.8% | 75.2% |
| 4093835 | 2.21.1.1 ↗ | beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) › SmpB | 0.63 | 50.0 | 5.14e-01 | 96.0% | 89.2% |
| 4937155 | 304.19.1.1 ↗ | a+b two layers › Alpha-beta plaits › eIF-2-alpha, C-terminal domain › eIF-2-alpha, C-terminal domain › EIF_2_alpha | 0.61 | 31.0 | 3.77e-01 | 96.0% | 75.0% |
| 3453652 | 304.8.1.22 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › AHAS-like_ACT | 0.60 | 31.0 | 3.49e-01 | 99.2% | 64.2% |
| 5039940 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.58 | 30.0 | 3.55e-01 | 98.4% | 72.9% |
| 3177739 | 304.9.1.103 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › PF26763 | 0.57 | 30.0 | 3.46e-01 | 97.6% | 67.4% |
| 5377 | 304.52.1.1 ↗ | a+b two layers › Alpha-beta plaits › YbeD/HP0495-like › YbeD/HP0495-like › DUF493 | 0.56 | 26.0 | 3.04e-01 | 96.0% | 58.1% |
| 3462394 | 304.9.1.1 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 | 0.56 | 29.0 | 2.91e-01 | 95.2% | 46.9% |
| 3253378 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.56 | 37.0 | 3.62e-01 | 95.2% | 61.5% |
| 3289745 | 304.4.1.4 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › ABM | 0.54 | 29.0 | 3.29e-01 | 97.6% | 68.4% |
| 3191092 | 327.11.2.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 | 0.53 | 29.0 | 3.21e-01 | 100.0% | 66.3% |
| 3515783 | 327.11.2.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 | 0.53 | 28.0 | 3.16e-01 | 99.2% | 65.3% |
| 1164093 | 304.18.1.1 ↗ | a+b two layers › Alpha-beta plaits › Anticodon-binding domain of PheRS › Anticodon-binding domain of PheRS › FDX-ACB | 0.53 | 32.0 | 3.51e-01 | 97.6% | 71.7% |
| 3611596 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.52 | 32.0 | 3.89e-01 | 94.4% | 96.2% |
| 3673542 | 327.11.2.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 | 0.52 | 27.0 | 3.51e-01 | 95.2% | 93.8% |
| 4439550 | 2.3.1.2 ↗ | beta barrels › OB-fold › TIMP-like › TIMP-like › NTR | 0.52 | 40.0 | 3.90e-01 | 96.0% | 73.4% |
| 3911770 | 327.11.2.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 | 0.51 | 28.0 | 3.22e-01 | 98.4% | 74.1% |
| 4809733 | 102.2.1.3 ↗ | alpha arrays › HhH/H2TH › H2TH › H2TH › NFACT_N | 0.51 | 40.0 | 3.68e-01 | 85.7% | 63.5% |
| 3026889 | 1.1.5.10 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Flavin_Reduct | 0.51 | 38.0 | 3.39e-01 | 96.8% | 55.6% |
| 1405082 | 4.21.1.1 ↗ | beta barrels › SH3 › ImpE-like › ImpE-like › ImpE | 0.50 | 39.0 | 3.56e-01 | 82.5% | 70.3% |
| 651 | 4.21.1.1 ↗ | beta barrels › SH3 › ImpE-like › ImpE-like › ImpE | 0.50 | 39.0 | 3.49e-01 | 81.7% | 68.9% |
| 1064500 | 1.1.5.10 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Flavin_Reduct | 0.50 | 37.0 | 3.48e-01 | 97.6% | 61.9% |