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term6_saliva_scaffold_0_prodigal-single.1__X__X__00053

Bact-Vir

term6_saliva_scaffold_0_prodigal-single.1__X__X__00053

Identity

Kingdom:
phage

Quality

87.5 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 8-50
PDB
Domain cluster: representative
CATH (19)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4wv4B00 1.10.20.10 Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A 0.76 59.0 4.49e-01 83.7% 40.9%
2r18A02 1.10.8.880 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Birnavirus VP3 protein, domain 2 0.69 51.0 4.67e-01 81.4% 64.4%
3tduA01 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.67 57.0 4.56e-01 100.0% 58.9%
2in3A02 1.10.472.60 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › putative protein disulfide isomerase domain 0.65 54.0 4.02e-01 100.0% 42.3%
1wdcC01 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.64 46.0 3.93e-01 81.4% 88.5%
1ij5A03 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.63 51.0 3.78e-01 100.0% 40.5%
2is9A01 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.63 52.0 3.96e-01 100.0% 47.8%
2kxeA00 1.10.8.800 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › D-family DNA polymerase, DP1 subunit N-terminal domain 0.63 53.0 4.54e-01 100.0% 68.1%
5zorA01 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.63 50.0 4.40e-01 97.7% 72.6%
2l09A01 1.10.8.550 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Proto-chlorophyllide reductase 57 kD subunit B 0.62 51.0 4.92e-01 97.7% 94.2%
1scmB02 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.60 45.0 4.02e-01 88.4% 69.1%
2bl0C01 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.60 51.0 4.32e-01 100.0% 72.0%
5c54G00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.58 42.0 2.53e-01 79.1% 19.9%
5h0pA00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.56 45.0 3.63e-01 100.0% 69.6%
2daxA01 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.56 43.0 3.23e-01 100.0% 88.7%
4fwdA02 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.55 43.0 3.75e-01 97.7% 71.8%
3n2xA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.54 42.0 2.59e-01 88.4% 95.6%
3e3rA02 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.54 44.0 3.52e-01 100.0% 69.7%
5wvoC02 1.10.10.2230 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.50 35.0 3.01e-01 83.7% 47.7%
ECOD (23)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3895727 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.73 59.0 5.72e-01 93.0% 100.0%
52232 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.73 61.0 5.04e-01 93.0% 86.7%
3543149 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.73 59.0 5.52e-01 95.3% 94.5%
3895660 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.72 61.0 5.17e-01 100.0% 73.3%
3559536 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.71 57.0 4.90e-01 95.3% 68.0%
3485466 108.1.1.73 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5+EF-hand_7 0.70 58.0 4.93e-01 97.7% 69.3%
4279770 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.70 62.0 5.38e-01 97.7% 72.3%
4309019 148.1.3.21 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_4 0.69 60.0 4.83e-01 100.0% 62.4%
4150365 148.1.3.21 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_4 0.69 60.0 4.82e-01 100.0% 62.4%
1019354 108.1.1.73 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5+EF-hand_7 0.68 56.0 4.98e-01 95.3% 78.1%
4024510 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.67 55.0 4.25e-01 95.3% 50.0%
3325524 101.1.9.8 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › IF2_N 0.66 51.0 4.97e-01 100.0% 90.9%
4250074 140.1.1.5 ↗ alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon_1 0.66 54.0 3.55e-01 97.7% 29.3%
3579672 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.66 52.0 4.97e-01 100.0% 92.7%
4974930 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.64 54.0 4.68e-01 97.7% 67.1%
3579656 103.1.1.0 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.64 48.0 4.34e-01 83.7% 60.0%
322581 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.63 52.0 4.24e-01 100.0% 60.7%
4971681 268.1.1.0 ↗ a+b two layers › Sterol carrier protein-like › Sterol carrier protein, SCP-related › Sterol carrier protein, SCP-related 0.60 46.0 3.52e-01 95.3% 80.8%
4403428 108.1.1.98 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_1, EF-hand_5, EF-hand_7 0.59 46.0 4.09e-01 95.3% 72.9%
3591442 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.59 48.0 4.05e-01 97.7% 65.0%
3242854 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.57 39.0 3.55e-01 74.4% 53.3%
4118150 1.1.2.1 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb2_6 0.55 46.0 3.17e-01 97.7% 26.1%
3802239 103.1.1.0 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.54 41.0 4.01e-01 95.3% 96.0%
D2 high residues 60-128
PDB
Domain cluster: representative
CATH (31)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2rceA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.69 49.0 4.26e-01 75.4% 76.4%
3noyB02 3.30.413.10 Alpha Beta › 2-Layer Sandwich › Sulfite Reductase Hemoprotein; domain 1 › Sulfite Reductase Hemoprotein, domain 1 0.68 38.0 3.43e-01 95.7% 40.0%
3k6yA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.66 47.0 4.11e-01 75.4% 82.2%
5hmaA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.66 47.0 4.12e-01 75.4% 80.8%
3oyyA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.64 45.0 4.68e-01 100.0% 78.5%
1boqA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.62 49.0 4.26e-01 85.5% 95.3%
4q66D01 6.20.120.50 Special › Other non-globular › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.62 40.0 4.00e-01 100.0% 63.0%
2ey4D00 2.40.10.230 Mainly Beta › Beta Barrel › Thrombin, subunit H › Probable tRNA pseudouridine synthase domain 0.62 48.0 4.64e-01 82.6% 74.7%
3gvpA02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.61 35.0 2.67e-01 97.1% 23.9%
1wczA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.60 51.0 4.34e-01 95.7% 80.9%
1p3cA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.60 49.0 4.26e-01 89.9% 92.4%
3u28C00 2.40.10.230 Mainly Beta › Beta Barrel › Thrombin, subunit H › Probable tRNA pseudouridine synthase domain 0.60 46.0 4.21e-01 85.5% 63.0%
1agjA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.58 49.0 4.05e-01 97.1% 92.5%
1ei5A02 2.40.128.50 Mainly Beta › Beta Barrel › Lipocalin › 0.58 43.0 4.10e-01 100.0% 68.3%
4n06A01 3.100.10.20 Alpha Beta › Ribosomal Protein L15; Chain: K; domain 2 › Ribosomal Protein L15; Chain: K; domain 2 › CRISPR-associated endonuclease Cas1, N-terminal domain 0.57 35.0 3.40e-01 92.8% 51.2%
1a1rA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.57 48.0 4.50e-01 92.8% 77.6%
1o9yC00 2.30.330.10 Mainly Beta › Roll › Surface presentation of antigens (SPOA) › SpoA-like 0.57 40.0 3.97e-01 73.9% 91.7%
2as9B01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.56 47.0 4.13e-01 91.3% 81.2%
2yyzA02 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.56 41.0 4.38e-01 94.2% 93.1%
5xrwC00 2.30.330.10 Mainly Beta › Roll › Surface presentation of antigens (SPOA) › SpoA-like 0.56 40.0 3.83e-01 73.9% 87.2%
2z1cB00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.54 41.0 4.10e-01 94.2% 78.4%
4cbvA02 2.40.50.1020 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › LytTr DNA-binding domain 0.54 40.0 3.40e-01 97.1% 47.5%
3bs1A00 2.40.50.1020 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › LytTr DNA-binding domain 0.53 38.0 3.40e-01 95.7% 51.5%
6ctzA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.53 37.0 3.38e-01 100.0% 53.8%
4bs9A01 3.90.930.60 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › 0.52 44.0 4.01e-01 97.1% 92.6%
2ymaA00 3.10.310.60 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › 0.52 40.0 3.33e-01 85.5% 77.0%
2ahoB01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 38.0 3.69e-01 81.2% 83.7%
2je6I02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 40.0 3.74e-01 85.5% 88.6%
3l4gB04 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.51 38.0 2.88e-01 84.1% 84.4%
3p8aA02 2.60.40.4320 Mainly Beta › Sandwich › Immunoglobulin-like › 0.50 34.0 3.17e-01 100.0% 54.4%
3go5A01 2.40.50.330 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.50 39.0 3.87e-01 100.0% 84.5%
ECOD (37)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4053143 1.1.5.6 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Peptidase_S7 0.71 45.0 3.71e-01 100.0% 36.7%
4148226 101.35.1.5 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH1 0.69 46.0 3.93e-01 100.0% 42.7%
4033610 101.35.1.5 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH1 0.65 46.0 3.92e-01 100.0% 46.4%
4985754 2.4.1.2 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.63 39.0 3.50e-01 100.0% 44.2%
3454710 1.1.17.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.63 51.0 3.54e-01 87.0% 89.1%
4390251 2.1.1.14 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RuvA_N 0.62 39.0 4.17e-01 100.0% 73.3%
3520270 101.35.1.5 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH1 0.62 42.0 3.70e-01 100.0% 46.7%
4969578 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.61 47.0 4.59e-01 84.1% 75.7%
4627519 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 31.0 3.66e-01 81.2% 77.5%
3305298 1.1.5.33 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.59 46.0 3.84e-01 84.1% 68.3%
4499041 1.1.5.57 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Mycop_pep_DUF31 0.58 45.0 3.21e-01 84.1% 50.2%
3770704 2.1.1.49 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › MRP-S35 0.57 33.0 3.54e-01 92.8% 65.0%
3596793 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.57 47.0 3.13e-01 91.3% 93.2%
3624033 7502.1.1.0 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS 0.57 38.0 3.21e-01 97.1% 40.9%
4971267 324.1.1.1 ↗ a+b two layers › OsmC-like › OsmC-like › OsmC-like › OsmC 0.56 36.0 2.93e-01 98.6% 33.8%
3674829 1.1.13.61 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Gar1 0.56 48.0 4.84e-01 92.8% 91.4%
4940177 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.56 43.0 4.31e-01 100.0% 81.4%
None — 0.56 46.0 3.51e-01 91.3% 44.6%
3964441 9.11.1.1 ↗ beta barrels › Lipocalins/Streptavidin › YdhA-like › YdhA-like › MliC 0.55 43.0 4.21e-01 100.0% 77.5%
5051148 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.53 40.0 4.27e-01 98.6% 95.0%
4553383 319.1.1.27 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › DUF5450 0.53 36.0 3.61e-01 98.6% 70.0%
4986737 2.1.1.109 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RRP4_S1 0.53 42.0 3.93e-01 91.3% 87.8%
4226766 3894.1.1.3 ↗ beta meanders › O-GlcNAc transferase GtfA beta-meander domain › O-GlcNAc transferase GtfA beta-meander domain › O-GlcNAc transferase GtfA beta-meander domain › GtfB_M 0.52 38.0 3.22e-01 81.2% 46.9%
4256788 2.1.1.7 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 0.52 39.0 3.63e-01 85.5% 78.9%
5040837 3794.1.1.0 ↗ a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Barrel domain in methylcrotonyl-CoA carboxylase alpha-subunit 0.51 40.0 4.00e-01 89.9% 92.0%
5062833 324.1.1.1 ↗ a+b two layers › OsmC-like › OsmC-like › OsmC-like › OsmC 0.51 34.0 2.73e-01 98.6% 33.6%
4376273 2.14.1.1 ↗ beta barrels › OB-fold › HupF/HypC-like › HupF/HypC-like › HupF_HypC 0.51 39.0 3.61e-01 97.1% 64.4%
5022458 324.1.1.1 ↗ a+b two layers › OsmC-like › OsmC-like › OsmC-like › OsmC 0.51 33.0 2.72e-01 98.6% 34.6%
5081561 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.51 42.0 4.04e-01 94.2% 97.5%
5047980 12.3.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich 0.50 40.0 2.74e-01 92.8% 40.5%
5879 324.1.1.1 ↗ a+b two layers › OsmC-like › OsmC-like › OsmC-like › OsmC 0.50 34.0 2.74e-01 98.6% 34.5%
3987339 844.1.1.2 ↗ beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › LOR 0.50 43.0 3.40e-01 100.0% 90.3%
3475647 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.50 40.0 2.76e-01 88.4% 92.0%
5016305 243.6.1.0 ↗ a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain 0.50 40.0 3.62e-01 87.0% 71.6%
4026364 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.50 36.0 3.34e-01 79.7% 78.9%
4024886 210.2.1.1 ↗ a+b four layers › Ntn/PP2C › Protein serine/threonine phosphatase 2C, catalytic domain › Protein serine/threonine phosphatase 2C, catalytic domain › PP2C 0.50 40.0 2.56e-01 89.9% 42.6%
4968507 324.1.1.1 ↗ a+b two layers › OsmC-like › OsmC-like › OsmC-like › OsmC 0.50 35.0 2.79e-01 98.6% 35.7%