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term6_saliva_scaffold_0_prodigal-single.1__X__X__00069
Bact-Virterm6_saliva_scaffold_0_prodigal-single.1__X__X__00069
Identity
- Kingdom:
- phage
Quality
69.2
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 52-103_196-235
Domain cluster:
representative
CATH (33)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4pcqA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.65 | 34.0 | 4.38e-01 | 80.4% | 92.0% |
| 4wcgA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.65 | 36.0 | 4.33e-01 | 79.3% | 82.0% |
| 5dukB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.64 | 33.0 | 3.87e-01 | 78.3% | 70.1% |
| 3ulqB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.63 | 36.0 | 4.32e-01 | 79.3% | 87.9% |
| 4p9fA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.63 | 34.0 | 3.92e-01 | 78.3% | 73.1% |
| 2r3sB01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.61 | 38.0 | 4.03e-01 | 89.1% | 70.4% |
| 1ulyA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.60 | 40.0 | 4.10e-01 | 90.2% | 69.7% |
| 2p5vA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.60 | 33.0 | 4.17e-01 | 82.6% | 94.2% |
| 6cc0A02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.60 | 37.0 | 4.11e-01 | 82.6% | 80.0% |
| 2h09A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.60 | 36.0 | 4.04e-01 | 83.7% | 77.5% |
| 5y6iA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.60 | 40.0 | 4.37e-01 | 91.3% | 84.9% |
| 3mczA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.60 | 38.0 | 4.01e-01 | 93.5% | 72.0% |
| 6uglB02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.59 | 34.0 | 4.12e-01 | 83.7% | 89.7% |
| 1s3jA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.59 | 35.0 | 4.11e-01 | 79.3% | 85.9% |
| 5y2vC01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.58 | 41.0 | 4.32e-01 | 85.9% | 80.0% |
| 7cluA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.58 | 39.0 | 4.05e-01 | 92.4% | 71.9% |
| 3cuqB03 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.58 | 37.0 | 4.23e-01 | 97.8% | 87.0% |
| 4ha8A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.58 | 36.0 | 4.17e-01 | 83.7% | 90.5% |
| 2wteA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.57 | 41.0 | 4.50e-01 | 96.7% | 94.4% |
| 2d1hB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.56 | 37.0 | 3.69e-01 | 91.3% | 62.2% |
| 3lmmC04 | 1.10.10.2340 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.55 | 36.0 | 3.67e-01 | 90.2% | 69.0% |
| 1c0wA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.55 | 41.0 | 4.58e-01 | 93.5% | 100.0% |
| 2l02A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.55 | 35.0 | 3.73e-01 | 83.7% | 73.2% |
| 1sfxB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.55 | 38.0 | 3.72e-01 | 94.6% | 63.5% |
| 1zarA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.54 | 39.0 | 4.01e-01 | 93.5% | 77.5% |
| 1jhgA00 | 1.10.1270.10 | Mainly Alpha › Orthogonal Bundle › Trp Operon Repressor; Chain A › TrpR-like | 0.54 | 35.0 | 3.41e-01 | 97.8% | 59.4% |
| 1mkmB01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 37.0 | 4.04e-01 | 97.8% | 88.2% |
| 2z99A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 39.0 | 4.03e-01 | 85.9% | 80.5% |
| 4go1A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 31.0 | 3.79e-01 | 84.8% | 96.3% |
| 2l09A01 | 1.10.8.550 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Proto-chlorophyllide reductase 57 kD subunit B | 0.53 | 30.0 | 3.76e-01 | 71.7% | 98.1% |
| 2ao9I01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.52 | 31.0 | 3.16e-01 | 100.0% | 59.8% |
| 2ethA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 37.0 | 3.27e-01 | 89.1% | 48.9% |
| 2kruA01 | 1.10.8.550 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Proto-chlorophyllide reductase 57 kD subunit B | 0.51 | 30.0 | 3.63e-01 | 71.7% | 100.0% |
ECOD (40)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4979401 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.67 | 36.0 | 4.55e-01 | 84.8% | 89.1% |
| 5046275 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.62 | 32.0 | 3.96e-01 | 72.8% | 81.8% |
| 5018162 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.62 | 32.0 | 3.93e-01 | 73.9% | 78.3% |
| 4952197 | 101.1.2.136 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_20 | 0.61 | 37.0 | 4.47e-01 | 87.0% | 93.3% |
| 3587467 | 101.1.2.110 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_IclR | 0.60 | 36.0 | 4.31e-01 | 87.0% | 90.0% |
| 5049209 | 101.1.2.46 ↗ | alpha arrays › HTH › HTH › winged helix domain › HrcA_DNA-bdg | 0.60 | 41.0 | 4.29e-01 | 95.7% | 75.3% |
| 5034772 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.60 | 36.0 | 4.40e-01 | 87.0% | 93.3% |
| 4967948 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.60 | 36.0 | 4.19e-01 | 77.2% | 84.6% |
| 4941002 | 101.1.2.210 ↗ | alpha arrays › HTH › HTH › winged helix domain › CggR_N | 0.60 | 38.0 | 3.93e-01 | 89.1% | 68.2% |
| 4963813 | 101.1.2.934 ↗ | alpha arrays › HTH › HTH › winged helix domain › HVO_A0261_N | 0.60 | 38.0 | 3.89e-01 | 89.1% | 65.6% |
| 3311219 | 102.2.1.0 ↗ | alpha arrays › HhH/H2TH › H2TH › H2TH | 0.59 | 40.0 | 4.39e-01 | 93.5% | 91.4% |
| 3715642 | 101.1.2.22 ↗ | alpha arrays › HTH › HTH › winged helix domain › PCI | 0.59 | 35.0 | 3.90e-01 | 78.3% | 73.3% |
| 4605981 | 102.2.1.0 ↗ | alpha arrays › HhH/H2TH › H2TH › H2TH | 0.59 | 40.0 | 4.43e-01 | 87.0% | 91.4% |
| 4991639 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.58 | 39.0 | 4.10e-01 | 90.2% | 78.8% |
| 3290673 | 101.1.2.135 ↗ | alpha arrays › HTH › HTH › winged helix domain › MarR_2 | 0.57 | 41.0 | 3.60e-01 | 89.1% | 51.1% |
| 3511772 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.56 | 41.0 | 4.22e-01 | 96.7% | 81.2% |
| 4982701 | 101.1.2.109 ↗ | alpha arrays › HTH › HTH › winged helix domain › Rio2_N | 0.56 | 40.0 | 4.18e-01 | 93.5% | 81.2% |
| 5000330 | 101.1.2.109 ↗ | alpha arrays › HTH › HTH › winged helix domain › Rio2_N | 0.56 | 38.0 | 4.07e-01 | 89.1% | 81.2% |
| 5022068 | 101.1.2.135 ↗ | alpha arrays › HTH › HTH › winged helix domain › MarR_2 | 0.56 | 40.0 | 3.47e-01 | 88.0% | 48.6% |
| 3983904 | 101.1.2.14 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_5 | 0.56 | 38.0 | 3.71e-01 | 97.8% | 61.9% |
| 3287925 | 101.1.2.15 ↗ | alpha arrays › HTH › HTH › winged helix domain › MarR | 0.56 | 40.0 | 3.41e-01 | 92.4% | 45.2% |
| 4939519 | 101.1.2.30 ↗ | alpha arrays › HTH › HTH › winged helix domain › TrmB | 0.56 | 40.0 | 3.79e-01 | 95.7% | 61.8% |
| 4968311 | 101.1.2.135 ↗ | alpha arrays › HTH › HTH › winged helix domain › MarR_2 | 0.56 | 36.0 | 4.08e-01 | 85.9% | 87.1% |
| 4989274 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.56 | 41.0 | 3.55e-01 | 77.2% | 96.4% |
| 4993345 | 101.1.2.15 ↗ | alpha arrays › HTH › HTH › winged helix domain › MarR | 0.55 | 36.0 | 3.89e-01 | 94.6% | 76.2% |
| 4988400 | 101.1.2.92 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_11 | 0.55 | 36.0 | 4.16e-01 | 87.0% | 93.8% |
| 4197192 | 101.1.2.55 ↗ | alpha arrays › HTH › HTH › winged helix domain › SMC_ScpB | 0.55 | 38.0 | 4.02e-01 | 83.7% | 80.0% |
| 5029837 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.55 | 38.0 | 3.91e-01 | 92.4% | 76.5% |
| 5042455 | 101.1.2.92 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_11 | 0.55 | 39.0 | 3.60e-01 | 95.7% | 57.1% |
| 4927447 | 101.1.2.92 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_11 | 0.54 | 40.0 | 4.41e-01 | 95.7% | 96.0% |
| 5048947 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.54 | 39.0 | 3.82e-01 | 90.2% | 69.0% |
| 3502250 | 101.1.2.110 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_IclR | 0.54 | 39.0 | 3.93e-01 | 97.8% | 73.7% |
| 4983914 | 101.1.2.136 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_20 | 0.54 | 40.0 | 4.31e-01 | 93.5% | 91.3% |
| 4959073 | 101.1.2.271 ↗ | alpha arrays › HTH › HTH › winged helix domain › B-block_TFIIIC | 0.54 | 37.0 | 3.46e-01 | 97.8% | 55.8% |
| 3980765 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.54 | 31.0 | 2.56e-01 | 76.1% | 31.5% |
| None | — | 0.52 | 36.0 | 3.14e-01 | 85.9% | 47.4% | |
| 3588023 | 101.1.2.92 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_11 | 0.51 | 38.0 | 4.07e-01 | 94.6% | 92.5% |
| 5005222 | 101.1.2.554 ↗ | alpha arrays › HTH › HTH › winged helix domain › PF30184 | 0.51 | 39.0 | 3.98e-01 | 90.2% | 83.3% |
| 3990034 | 101.1.2.92 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_11 | 0.50 | 40.0 | 4.07e-01 | 96.7% | 86.7% |
| 4395674 | 101.1.2.92 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_11 | 0.50 | 39.0 | 4.02e-01 | 96.7% | 89.4% |
D2
medium
residues 104-195
Domain cluster:
representative
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3uoeA01 | 1.10.1530.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical Oxidoreductase Yiak; Chain: A, domain 1 › Malate/L-lactate/L-sulpholactate dehydrogenase, four-helix barrel | 0.64 | 41.0 | 4.27e-01 | 72.8% | 69.0% |
| 1kyqA03 | 1.10.3280.10 | Mainly Alpha › Orthogonal Bundle › Siro heme synthase C-terminal domain-like › Siroheme synthase; domain 3 | 0.64 | 44.0 | 4.58e-01 | 75.0% | 77.4% |
| 1rp3A01 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.60 | 42.0 | 4.41e-01 | 73.9% | 85.9% |
| 4bkxA01 | 4.10.1240.50 | Few Secondary Structures › Irregular › Hormone receptor fold › | 0.59 | 41.0 | 3.83e-01 | 70.7% | 60.2% |
| 1w9cA00 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.59 | 37.0 | 2.50e-01 | 75.0% | 17.8% |
| 1n5uA01 | 1.10.246.10 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › | 0.58 | 46.0 | 4.44e-01 | 85.9% | 79.6% |
| 2a6hF01 | 1.20.120.1810 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.56 | 42.0 | 3.46e-01 | 83.7% | 97.8% |
| 3jvoA00 | 1.10.3230.30 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein yqbg › Phage gp6-like head-tail connector protein | 0.54 | 44.0 | 4.35e-01 | 90.2% | 92.7% |
| 5ucdA01 | 3.40.605.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 | 0.52 | 40.0 | 2.99e-01 | 81.5% | 70.3% |
| 7emyA02 | 3.30.559.10 | Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain | 0.52 | 38.0 | 3.19e-01 | 78.3% | 82.5% |
| 4mozD00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.51 | 44.0 | 3.14e-01 | 98.9% | 85.9% |
ECOD (11)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2409829 | 101.1.4.14 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › Xre_MbcA_ParS_C,Xre-like-HTH | 0.75 | 59.0 | 4.94e-01 | 82.6% | 65.1% |
| 4555054 | 101.1.4.14 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › Xre_MbcA_ParS_C,Xre-like-HTH | 0.70 | 49.0 | 4.60e-01 | 71.7% | 87.3% |
| 3389260 | 308.1.1.1 ↗ | a+b two layers › ClpS-like › ClpS-related › ClpS-related › Ribosomal_L12 | 0.70 | 35.0 | 3.78e-01 | 84.8% | 56.2% |
| 2491422 | 101.30.1.1 ↗ | alpha arrays › HTH › Rv2175c › Rv2175c › Xre_MbcA_ParS_C | 0.70 | 49.0 | 5.38e-01 | 72.8% | 98.6% |
| 4146770 | 101.1.4.14 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › Xre_MbcA_ParS_C,Xre-like-HTH | 0.68 | 51.0 | 4.55e-01 | 79.3% | 79.2% |
| 3260615 | 103.4.1.5 ↗ | alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › KIX_2 | 0.66 | 47.0 | 4.87e-01 | 72.8% | 80.0% |
| 4320557 | 3290.1.1.1 ↗ | alpha complex topology › Cytosolic helical domain in ferrous iron transport protein B › Cytosolic helical domain in ferrous iron transport protein B › Cytosolic helical domain in ferrous iron transport protein B › FeoB_Cyto | 0.62 | 39.0 | 3.95e-01 | 94.6% | 62.1% |
| 3961111 | 2007.1.19.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › FabD/lysophospholipase-like › Acyl_transf_1 | 0.62 | 49.0 | 4.19e-01 | 88.0% | 73.5% |
| 3942918 | 3431.1.1.3 ↗ | alpha bundles › Helical domain in autophagy protein 5 › Helical domain in autophagy protein 5 › Helical domain in autophagy protein 5 › PF27428 | 0.61 | 43.0 | 4.75e-01 | 73.9% | 100.0% |
| 3964960 | 2498.1.1.0 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" | 0.56 | 46.0 | 3.27e-01 | 91.3% | 51.7% |
| 3180704 | 592.6.1.1 ↗ | alpha arrays › PWI domain-like › Pre-mRNA-splicing helicase BRR2 plug domain › Pre-mRNA-splicing helicase BRR2 plug domain › BRR2_plug | 0.55 | 39.0 | 3.68e-01 | 96.7% | 60.0% |
D3
medium
residues 236-293
D4
medium
residues 294-456