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term6_saliva_scaffold_0_prodigal-single.1__X__X__00140
Bact-Virterm6_saliva_scaffold_0_prodigal-single.1__X__X__00140
Identity
- Kingdom:
- phage
Quality
70.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 21-127
Domain cluster:
representative
CATH (30)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1u07B00 | 3.30.2420.10 | Alpha Beta › 2-Layer Sandwich › TolA/TonB C-terminal domain › TonB | 0.68 | 38.0 | 4.16e-01 | 100.0% | 65.9% |
| 3onrJ00 | 3.30.1660.10 | Alpha Beta › 2-Layer Sandwich › Dodecin subunit-like › Flavin-binding protein dodecin | 0.64 | 37.0 | 4.43e-01 | 100.0% | 88.2% |
| 3o4oB03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.63 | 38.0 | 3.85e-01 | 100.0% | 58.7% |
| 1lr0A00 | 3.30.1150.10 | Alpha Beta › 2-Layer Sandwich › Fusion Protein Consisting Of Minor Coat Protein, Glycine Rich Linker, Tola, And A His Tag; Chain: A; Domain 2 › | 0.62 | 41.0 | 3.91e-01 | 98.1% | 56.3% |
| 2bc4A02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.61 | 41.0 | 4.15e-01 | 87.9% | 67.0% |
| 4q7aC02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.61 | 43.0 | 4.33e-01 | 100.0% | 73.1% |
| 3uebF00 | 3.30.300.100 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › MTH677-like | 0.59 | 40.0 | 4.15e-01 | 100.0% | 74.0% |
| 4h4nA00 | 2.60.40.3750 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.59 | 30.0 | 3.88e-01 | 99.1% | 85.5% |
| 2j3wC00 | 3.30.450.70 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.59 | 43.0 | 4.01e-01 | 96.3% | 61.5% |
| 3cueC00 | 3.30.450.70 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.58 | 41.0 | 3.74e-01 | 100.0% | 55.2% |
| 4nasB01 | 3.30.70.150 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RuBisCO large subunit, N-terminal domain | 0.57 | 39.0 | 3.86e-01 | 100.0% | 66.4% |
| 1vr4E00 | 3.30.110.70 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Hypothetical protein apc22750. Chain B | 0.56 | 39.0 | 4.22e-01 | 100.0% | 83.9% |
| 2rb7A02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.55 | 40.0 | 4.01e-01 | 100.0% | 73.8% |
| 2g47A02 | 3.30.830.10 | Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like | 0.55 | 42.0 | 3.34e-01 | 81.3% | 92.2% |
| 3gtyX02 | 3.10.50.30 | Alpha Beta › Roll › Chitinase A; domain 3 › Transcription elongation factor, GreA/GreB, C-terminal domain | 0.54 | 39.0 | 4.37e-01 | 99.1% | 95.2% |
| 4e4tA03 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.53 | 45.0 | 3.68e-01 | 92.5% | 58.4% |
| 1jz7A02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 43.0 | 4.21e-01 | 89.7% | 99.1% |
| 3fsyB01 | 3.30.70.2010 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.52 | 32.0 | 3.25e-01 | 95.3% | 59.3% |
| 3r4rA01 | 2.60.40.2580 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.52 | 41.0 | 3.72e-01 | 86.0% | 98.7% |
| 5u3fB01 | 3.30.470.10 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › Aminotransferase class 4, branched-chain amino acid transferase, N-terminal domain | 0.52 | 40.0 | 3.75e-01 | 100.0% | 64.3% |
| 2e0zA01 | 3.30.2400.20 | Alpha Beta › 2-Layer Sandwich › Major capsid protein gp5 fold › | 0.52 | 36.0 | 3.69e-01 | 99.1% | 72.9% |
| 6toaF01 | 3.30.2000.30 | Alpha Beta › 2-Layer Sandwich › STM4215-like › | 0.52 | 47.0 | 4.41e-01 | 100.0% | 100.0% |
| 3gf8A01 | 2.60.40.2100 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.52 | 41.0 | 3.64e-01 | 86.0% | 86.1% |
| 3pfoA02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.52 | 40.0 | 3.84e-01 | 100.0% | 69.5% |
| 4jg5A01 | 2.60.40.2580 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.52 | 40.0 | 3.51e-01 | 86.0% | 88.6% |
| 7d58G01 | 3.30.1490.120 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RNA polymerase Rpb7-like, N-terminal domain | 0.51 | 35.0 | 3.94e-01 | 100.0% | 100.0% |
| 2i87B02 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.51 | 42.0 | 3.67e-01 | 87.9% | 70.4% |
| 4acvA00 | 3.30.2000.30 | Alpha Beta › 2-Layer Sandwich › STM4215-like › | 0.51 | 46.0 | 4.47e-01 | 100.0% | 98.3% |
| 4mamB03 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.51 | 44.0 | 3.70e-01 | 96.3% | 64.4% |
| 4ksnA00 | 6.20.250.80 | Special › Other non-globular › Double Stranded RNA Binding Domain › | 0.50 | 30.0 | 3.68e-01 | 100.0% | 96.9% |
ECOD (28)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3972969 | 272.1.1.0 ↗ | a+b two layers › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain | 0.70 | 42.0 | 4.48e-01 | 99.1% | 67.4% |
| 4338610 | 272.1.1.0 ↗ | a+b two layers › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain | 0.68 | 40.0 | 4.59e-01 | 99.1% | 79.7% |
| 5052852 | 873.1.1.0 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain | 0.67 | 46.0 | 3.89e-01 | 71.0% | 68.5% |
| 3964903 | 272.1.1.1 ↗ | a+b two layers › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TonB_C | 0.66 | 37.0 | 4.32e-01 | 97.2% | 77.3% |
| 4289847 | 272.1.1.1 ↗ | a+b two layers › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TonB_C | 0.66 | 40.0 | 4.26e-01 | 100.0% | 68.4% |
| 3199696 | 76.1.1.0 ↗ | beta duplicates or obligate multimers › beta-Prism I › beta-Prism I › beta-Prism I | 0.66 | 32.0 | 3.31e-01 | 99.1% | 48.6% |
| 4549660 | 272.1.1.1 ↗ | a+b two layers › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TonB_C | 0.63 | 38.0 | 4.32e-01 | 97.2% | 80.0% |
| 4324302 | 272.1.1.1 ↗ | a+b two layers › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TonB_C | 0.63 | 40.0 | 4.51e-01 | 100.0% | 86.1% |
| 3596272 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.62 | 49.0 | 3.90e-01 | 99.1% | 41.8% |
| 3782284 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.60 | 49.0 | 3.98e-01 | 99.1% | 45.2% |
| 4380266 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.60 | 50.0 | 3.92e-01 | 100.0% | 42.2% |
| 3685834 | 306.3.1.0 ↗ | a+b two layers › Glucose permease domain IIB-like › eIF1-like › eIF1-like | 0.58 | 44.0 | 4.38e-01 | 86.0% | 74.8% |
| 3783468 | 223.2.1.9 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › Sedlin_N | 0.58 | 49.0 | 4.44e-01 | 95.3% | 67.3% |
| 3232400 | 382.1.1.0 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like | 0.55 | 39.0 | 4.42e-01 | 99.1% | 91.8% |
| 3270559 | 883.1.1.6 ↗ | a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1_N | 0.55 | 40.0 | 3.58e-01 | 77.6% | 87.5% |
| 3504023 | 883.1.1.2 ↗ | a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP_C | 0.54 | 40.0 | 3.11e-01 | 77.6% | 80.0% |
| 5079195 | 304.102.1.2 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruD | 0.54 | 42.0 | 3.37e-01 | 85.0% | 85.8% |
| 3596055 | 273.1.1.0 ↗ | a+b three layers › PR-1-like › PR-1-like › PR-1-like | 0.53 | 42.0 | 3.94e-01 | 86.9% | 100.0% |
| 3214302 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.53 | 37.0 | 3.62e-01 | 71.0% | 92.2% |
| 3790672 | 223.2.1.9 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › Sedlin_N | 0.53 | 45.0 | 4.14e-01 | 95.3% | 95.8% |
| 4883824 | 304.124.1.6 ↗ | a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like › DUF5072 | 0.52 | 47.0 | 4.46e-01 | 100.0% | 95.3% |
| 3722854 | 11.1.1.419 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF3694 | 0.52 | 45.0 | 3.76e-01 | 100.0% | 95.6% |
| 3601464 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.52 | 42.0 | 2.87e-01 | 86.9% | 77.0% |
| 3345486 | 5.1.3.144 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › b-prop_At3g26010-like | 0.51 | 45.0 | 3.21e-01 | 96.3% | 99.7% |
| 4948087 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.51 | 37.0 | 3.55e-01 | 100.0% | 63.1% |
| 3697909 | 331.3.1.5 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc | 0.51 | 38.0 | 3.17e-01 | 79.4% | 88.2% |
| 3214839 | 11.10.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like | 0.51 | 44.0 | 3.94e-01 | 100.0% | 94.4% |
| 3933652 | 11.2.1.52 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2_nem | 0.50 | 39.0 | 3.73e-01 | 86.0% | 90.8% |