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term6_stool_scaffold_5_prodigal-single.1__X__X__00036
Bact-Virterm6_stool_scaffold_5_prodigal-single.1__X__X__00036
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 17-152
Domain cluster:
representative
CATH (17)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6xz3A01 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.67 | 39.0 | 4.15e-01 | 96.3% | 65.8% |
| 3behB01 | 1.20.120.540 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels | 0.59 | 36.0 | 3.88e-01 | 70.6% | 69.2% |
| 5cy5B00 | 1.20.1200.10 | Mainly Alpha › Up-down Bundle › Hypothetical Protein Ta1238; Chain: A; › Cobalamin adenosyltransferase-like | 0.59 | 44.0 | 4.32e-01 | 77.9% | 82.6% |
| 2h7oA01 | 1.20.120.1330 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Rac1-binding domain, N-terminal GTPase binding subdomain | 0.59 | 44.0 | 4.60e-01 | 77.2% | 86.2% |
| 3f4mA00 | 1.20.1440.160 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Tumor necrosis factor alpha-induced protein 8-like | 0.57 | 35.0 | 3.38e-01 | 98.5% | 51.9% |
| 2fji101 | 1.10.357.50 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › | 0.57 | 42.0 | 3.66e-01 | 76.5% | 74.2% |
| 1wvtA00 | 1.20.1200.10 | Mainly Alpha › Up-down Bundle › Hypothetical Protein Ta1238; Chain: A; › Cobalamin adenosyltransferase-like | 0.57 | 43.0 | 4.21e-01 | 78.7% | 81.8% |
| 4etrB00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.55 | 38.0 | 4.04e-01 | 93.4% | 79.5% |
| 4ie5A02 | 1.20.58.1470 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › FTO C-terminal domain | 0.55 | 41.0 | 4.14e-01 | 76.5% | 98.5% |
| 1aepA00 | 1.20.120.20 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Apolipoprotein | 0.54 | 49.0 | 4.72e-01 | 100.0% | 94.8% |
| 1fxkB00 | 1.10.287.370 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.51 | 33.0 | 3.64e-01 | 87.5% | 79.8% |
| 4fxdA04 | 3.90.1600.10 | Alpha Beta › Alpha-Beta Complex › Palm domain of DNA polymerase › B family DNA polymerase, palm domain | 0.51 | 40.0 | 3.86e-01 | 82.4% | 95.4% |
| 2l7nA00 | 1.20.1420.10 | Mainly Alpha › Up-down Bundle › A middle domain of Talin 1 › Talin, central domain | 0.51 | 38.0 | 3.54e-01 | 76.5% | 72.0% |
| 1dbhA01 | 1.20.900.10 | Mainly Alpha › Up-down Bundle › Dbl Homology Domain; Chain A › Dbl homology (DH) domain | 0.51 | 41.0 | 3.59e-01 | 86.8% | 78.2% |
| 4kf9A02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.51 | 36.0 | 3.70e-01 | 74.3% | 97.0% |
| 2zdiB00 | 1.10.287.370 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.51 | 32.0 | 3.63e-01 | 87.5% | 82.1% |
| 2v0pA00 | 1.25.40.540 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › TAP42-like family | 0.50 | 39.0 | 3.37e-01 | 81.6% | 92.2% |
ECOD (31)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3254198 | 603.5.1.0 ↗ | alpha bundles › STAT-like › FlgN-like › FlgN-like | 0.68 | 63.0 | 5.64e-01 | 100.0% | 88.1% |
| 3423387 | 611.9.1.0 ↗ | alpha bundles › N-cbl like › Resistance protein (Rx) N-terminal domain › Resistance protein (Rx) N-terminal domain | 0.66 | 40.0 | 4.39e-01 | 100.0% | 73.6% |
| 3996787 | 601.1.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin | 0.64 | 39.0 | 3.72e-01 | 97.1% | 50.6% |
| 3261408 | 109.4.1.404 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fes1 | 0.61 | 47.0 | 3.35e-01 | 79.4% | 46.8% |
| 3435449 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.60 | 42.0 | 2.82e-01 | 72.8% | 30.6% |
| 3194988 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.59 | 45.0 | 3.08e-01 | 82.4% | 27.0% |
| 3812703 | 3758.1.1.7 ↗ | alpha bundles › Bacterial hemolysins-like › Bacterial hemolysins › Bacterial hemolysins › BPS1 | 0.58 | 44.0 | 3.77e-01 | 78.7% | 97.3% |
| 3690200 | 7087.1.1.0 ↗ | alpha bundles › Emopamil binding protein (EBP) transmembrane domain › Emopamil binding protein (EBP) transmembrane domain › Emopamil binding protein (EBP) transmembrane domain | 0.58 | 47.0 | 4.20e-01 | 89.0% | 96.5% |
| 3264751 | 4044.1.1.0 ↗ | alpha bundles › Helical bundle domain in prismane-like proteins › Helical bundle domain in prismane-like proteins › Helical bundle domain in prismane-like proteins | 0.57 | 49.0 | 4.85e-01 | 98.5% | 86.9% |
| 4932794 | 1203.1.2.0 ↗ | alpha bundles › Shroom domain 2 › Shroom domain 2 › Human SD2 | 0.57 | 42.0 | 3.64e-01 | 75.7% | 85.2% |
| 3629379 | 3599.1.1.1 ↗ | alpha superhelices › Mitochondrial malonyl-CoA decarboxylase helical domain › Mitochondrial malonyl-CoA decarboxylase helical domain › Mitochondrial malonyl-CoA decarboxylase helical domain › MCD_N | 0.57 | 41.0 | 4.09e-01 | 74.3% | 85.0% |
| 3692455 | 633.6.1.8 ↗ | alpha bundles › Bromodomain-like › Acyl-CoA dehydrogenase C-terminal domain-like › Acyl-CoA dehydrogenase C-terminal domain-like › ACOX_C_alpha1 | 0.57 | 45.0 | 3.91e-01 | 83.1% | 84.9% |
| 3453205 | 633.21.1.0 ↗ | alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 | 0.56 | 47.0 | 4.67e-01 | 87.5% | 96.4% |
| 3484828 | 150.1.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin | 0.56 | 44.0 | 4.27e-01 | 84.6% | 95.5% |
| 3223290 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.56 | 45.0 | 2.86e-01 | 88.2% | 58.0% |
| 3706903 | 277.1.1.1 ↗ | a+b two layers › PX domain › PX domain › PX domain › PX | 0.55 | 49.0 | 4.73e-01 | 96.3% | 92.8% |
| 3577589 | 150.1.1.100 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › TMD0_ABC | 0.54 | 44.0 | 4.15e-01 | 86.8% | 78.2% |
| 3798299 | 633.22.1.0 ↗ | alpha bundles › Bromodomain-like › Vitamin K epoxide reductase (VKOR) › Vitamin K epoxide reductase (VKOR) | 0.53 | 44.0 | 3.86e-01 | 87.5% | 65.0% |
| 3233983 | 604.1.1.93 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › TMD0_ABC | 0.53 | 43.0 | 3.76e-01 | 85.3% | 64.5% |
| 3513005 | 174.1.1.0 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain | 0.53 | 43.0 | 4.33e-01 | 87.5% | 98.6% |
| 5053978 | 5067.1.1.2 ↗ | alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › SecD_SecF | 0.53 | 44.0 | 3.76e-01 | 89.0% | 89.8% |
| 3766780 | 5081.1.1.1 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid | 0.52 | 40.0 | 3.93e-01 | 85.3% | 74.5% |
| 3536637 | 633.23.1.22 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin › MARVEL | 0.52 | 42.0 | 4.22e-01 | 87.5% | 100.0% |
| 3408266 | 3615.1.1.0 ↗ | alpha bundles › Bacterial dynamin-like protein helical domain › Bacterial dynamin-like protein helical domain › Bacterial dynamin-like protein helical domain | 0.52 | 42.0 | 4.15e-01 | 88.2% | 91.3% |
| 3543848 | 633.21.1.31 ↗ | alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 › PF27925 | 0.52 | 43.0 | 4.25e-01 | 89.0% | 95.2% |
| 5023069 | 5067.1.1.2 ↗ | alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › SecD_SecF | 0.52 | 42.0 | 3.74e-01 | 86.0% | 92.8% |
| 3238365 | 109.4.1.32 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › MIF4G | 0.52 | 42.0 | 2.81e-01 | 88.2% | 35.7% |
| 1503850 | 617.1.1.2 ↗ | alpha bundles › A virus capsid protein alpha-helical domain › A virus capsid protein alpha-helical domain › A virus capsid protein alpha-helical domain › Rota_Capsid_VP6 | 0.51 | 43.0 | 4.21e-01 | 90.4% | 83.1% |
| 3229713 | 150.1.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin | 0.51 | 37.0 | 3.58e-01 | 74.3% | 93.3% |
| 3280416 | 5059.1.1.1 ↗ | alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA | 0.51 | 38.0 | 3.06e-01 | 78.7% | 94.7% |
| 4119028 | 604.5.1.2 ↗ | alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › PhoU | 0.51 | 41.0 | 3.63e-01 | 88.2% | 59.0% |