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term6_stool_scaffold_5_prodigal-single.1__X__X__00064
Bact-Virterm6_stool_scaffold_5_prodigal-single.1__X__X__00064
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 8-99
Domain cluster:
representative
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2igsA00 | 1.10.3690.10 | Mainly Alpha › Orthogonal Bundle › PA2222-like fold › PA2222-like domain | 0.61 | 53.0 | 4.11e-01 | 98.9% | 83.2% |
| 5i92F01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.60 | 41.0 | 3.36e-01 | 71.7% | 49.4% |
| 3l44A01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.59 | 43.0 | 3.48e-01 | 76.1% | 49.2% |
| 6liuC02 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.58 | 41.0 | 3.81e-01 | 73.9% | 75.9% |
| 4gkfA00 | 1.10.520.30 | Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 1 › AF1862-like domain | 0.55 | 46.0 | 4.02e-01 | 94.6% | 78.1% |
| 3a8rA01 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.54 | 43.0 | 4.08e-01 | 88.0% | 80.5% |
| 4o1pD02 | 1.10.510.10 | Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 | 0.54 | 37.0 | 2.79e-01 | 72.8% | 73.0% |
ECOD (4)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4498125 | 3016.1.1.2 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › Aminotran_3 | 0.58 | 39.0 | 3.53e-01 | 70.7% | 58.5% |
| 4626442 | 7010.1.1.0 ↗ | alpha arrays › Activation-binding domain of RNA polymerase II mediator › Activation-binding domain of RNA polymerase II mediator › Activation-binding domain of RNA polymerase II mediator | 0.52 | 33.0 | 3.85e-01 | 100.0% | 96.7% |
| 3970703 | 142.1.1.0 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors | 0.52 | 29.0 | 3.16e-01 | 100.0% | 65.3% |
| 4651935 | 632.7.1.49 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain › PFF1_TM | 0.51 | 39.0 | 3.11e-01 | 81.5% | 55.0% |
D2
high
residues 104-217
Domain cluster:
rep: IMGVR_UViG_3300002484_001677-3300002484-JGI25129J35166_10014225__D68-155
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF09374.16 best | PG_binding_3 | 28.6 | 1.80e-06 | 76.3% | 84.2% |
CATH (39)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6v3zA00 | 1.20.141.10 | Mainly Alpha › Up-down Bundle › Chitosanase, subunit A; domain 1 › Chitosanase, subunit A, domain 1 | 0.76 | 68.0 | 5.85e-01 | 100.0% | 62.4% |
| 2gf4A00 | 1.20.1270.110 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Uncharacterised protein family UPF0058 | 0.71 | 43.0 | 4.81e-01 | 80.7% | 78.4% |
| 4lqxA00 | 1.20.910.10 | Mainly Alpha › Up-down Bundle › Heme Oxygenase; Chain A › Heme oxygenase-like | 0.64 | 53.0 | 3.94e-01 | 90.4% | 78.2% |
| 3a06B03 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.64 | 33.0 | 3.76e-01 | 76.3% | 64.8% |
| 5llmA00 | 1.10.3860.10 | Mainly Alpha › Orthogonal Bundle › Proton glutamate symport protein › Sodium:dicarboxylate symporter | 0.63 | 50.0 | 3.44e-01 | 86.0% | 85.0% |
| 7zdtD01 | 1.20.1560.10 | Mainly Alpha › Up-down Bundle › ABC transporter transmembrane region fold › ABC transporter type 1, transmembrane domain | 0.60 | 42.0 | 3.06e-01 | 72.8% | 88.7% |
| 1a00B00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.60 | 48.0 | 4.43e-01 | 86.0% | 86.3% |
| 2paqA00 | 1.10.3210.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 | 0.59 | 48.0 | 4.16e-01 | 86.8% | 81.4% |
| 1cg5B00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.58 | 50.0 | 4.65e-01 | 92.1% | 85.1% |
| 5ojcA00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.58 | 49.0 | 4.46e-01 | 92.1% | 82.5% |
| 3nqwA00 | 1.10.3210.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 | 0.58 | 45.0 | 3.94e-01 | 83.3% | 74.7% |
| 1gcvA00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.58 | 48.0 | 4.51e-01 | 90.4% | 83.6% |
| 4bq2D02 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.57 | 47.0 | 3.09e-01 | 91.2% | 31.5% |
| 1gcvB00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.57 | 48.0 | 4.55e-01 | 91.2% | 85.3% |
| 4iu9B01 | 1.20.1250.20 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › MFS general substrate transporter like domains | 0.56 | 50.0 | 3.95e-01 | 96.5% | 83.0% |
| 4bujE03 | 1.10.3380.30 | Mainly Alpha › Orthogonal Bundle › Sec63 N-terminal domain-like fold › | 0.56 | 45.0 | 3.63e-01 | 86.8% | 61.4% |
| 5af7B03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.56 | 49.0 | 4.55e-01 | 97.4% | 81.8% |
| 1ivhA03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.56 | 49.0 | 4.62e-01 | 97.4% | 86.5% |
| 2d2mD00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.56 | 47.0 | 4.36e-01 | 92.1% | 86.2% |
| 4m70I00 | 1.20.5.4130 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.56 | 42.0 | 4.34e-01 | 86.0% | 83.3% |
| 1rxqD00 | 1.20.120.450 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain | 0.56 | 43.0 | 3.81e-01 | 82.5% | 93.5% |
| 2ynqB00 | 1.25.40.680 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Type VII secretion system EssB, C-terminal-like domain | 0.55 | 41.0 | 3.72e-01 | 76.3% | 61.6% |
| 1siqA03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.55 | 49.0 | 4.40e-01 | 96.5% | 81.3% |
| 1rx0A03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.55 | 49.0 | 4.40e-01 | 96.5% | 81.9% |
| 4iu9B02 | 1.20.1250.20 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › MFS general substrate transporter like domains | 0.55 | 48.0 | 3.93e-01 | 95.6% | 88.2% |
| 3sfvB02 | 6.10.140.2010 | Special › Helix non-globular › Helix Hairpins › | 0.54 | 44.0 | 3.68e-01 | 86.8% | 100.0% |
| 4doyA03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.54 | 48.0 | 4.07e-01 | 96.5% | 76.5% |
| 3m9vA03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.54 | 48.0 | 4.30e-01 | 97.4% | 85.4% |
| 4k1pE00 | 1.20.1170.10 | Mainly Alpha › Up-down Bundle › Hemolysin E; Chain: A; › | 0.54 | 43.0 | 3.11e-01 | 85.1% | 78.2% |
| 2o57A01 | 1.10.287.840 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Mycolic acid cyclopropane synthase domain like | 0.54 | 38.0 | 4.03e-01 | 88.6% | 81.0% |
| 2aniA00 | 1.10.620.20 | Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase, subunit A › Ribonucleotide Reductase, subunit A | 0.53 | 47.0 | 3.38e-01 | 96.5% | 69.4% |
| 3ez0C00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.53 | 47.0 | 3.87e-01 | 100.0% | 53.8% |
| 4o6yB00 | 1.20.120.1770 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.53 | 46.0 | 3.77e-01 | 96.5% | 91.9% |
| 3gyuA00 | 1.10.565.10 | Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor | 0.52 | 44.0 | 3.50e-01 | 93.9% | 72.7% |
| 1dd5A01 | 1.10.132.20 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor | 0.52 | 39.0 | 4.03e-01 | 85.1% | 82.6% |
| 5olkB01 | 1.10.620.20 | Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase, subunit A › Ribonucleotide Reductase, subunit A | 0.51 | 47.0 | 3.51e-01 | 100.0% | 46.2% |
| 2c0kB00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.51 | 43.0 | 3.96e-01 | 92.1% | 84.6% |
| 3o7pA01 | 1.20.1250.20 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › MFS general substrate transporter like domains | 0.51 | 45.0 | 3.62e-01 | 95.6% | 89.0% |
| 1ohuA00 | 1.10.437.10 | Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like | 0.51 | 40.0 | 3.62e-01 | 86.0% | 75.8% |
ECOD (18)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2774002 | 235.1.1.13 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Glyco_hydro_108,PG_binding_3 | 0.79 | 69.0 | 5.77e-01 | 100.0% | 56.0% |
| 4002051 | 3930.1.1.0 ↗ | alpha bundles › Helical bundle insertion in helicase domains › Helical bundle in Hef helicase › Helical bundle in Hef helicase | 0.62 | 42.0 | 4.11e-01 | 75.4% | 63.2% |
| 4240634 | 1075.4.1.1 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › ABC_membrane | 0.61 | 42.0 | 3.08e-01 | 71.1% | 88.3% |
| 4949990 | 3758.2.1.0 ↗ | alpha bundles › Bacterial hemolysins-like › Biopolymer transport protein ExbB › Biopolymer transport protein ExbB | 0.59 | 41.0 | 3.45e-01 | 71.9% | 85.8% |
| 5024310 | 131.1.1.10 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD_3 | 0.59 | 48.0 | 4.10e-01 | 86.8% | 80.6% |
| 4499455 | 633.5.1.1 ↗ | alpha bundles › Bromodomain-like › LemA-like › LemA-like › LemA | 0.57 | 43.0 | 3.89e-01 | 96.5% | 56.9% |
| 3255663 | 633.21.1.0 ↗ | alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 | 0.57 | 44.0 | 4.58e-01 | 96.5% | 88.6% |
| 3430430 | 5050.1.1.2 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › PTR2 | 0.57 | 50.0 | 3.71e-01 | 95.6% | 70.7% |
| 3929508 | 5050.1.1.11 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › UNC-93 | 0.56 | 49.0 | 3.86e-01 | 95.6% | 78.7% |
| 3263522 | 5050.1.1.11 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › UNC-93 | 0.55 | 49.0 | 3.96e-01 | 95.6% | 85.9% |
| 5067889 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.54 | 41.0 | 4.29e-01 | 84.2% | 84.8% |
| 3269680 | 5050.1.1.8 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › FPN1 | 0.53 | 46.0 | 3.52e-01 | 95.6% | 80.4% |
| 3921752 | 5050.1.1.1 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Sugar_tr | 0.53 | 47.0 | 3.70e-01 | 95.6% | 76.2% |
| 3407735 | 3289.1.1.8 ↗ | alpha complex topology › Nck-associated protein 1/Cytoplasmic FMR1-interacting protein 1 › Nck-associated protein 1/Cytoplasmic FMR1-interacting protein 1 › Nck-associated protein 1/Cytoplasmic FMR1-interacting protein 1 › Strumpellin | 0.53 | 41.0 | 4.29e-01 | 96.5% | 90.5% |
| 3971899 | 5050.1.1.0 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter | 0.52 | 46.0 | 3.77e-01 | 96.5% | 79.8% |
| 3659038 | 603.1.1.102 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins › DUF3537 | 0.52 | 46.0 | 3.23e-01 | 100.0% | 59.7% |
| 4946356 | 620.1.1.0 ↗ | alpha bundles › YfiT-like putative metal-dependent hydrolases › YfiT-like putative metal-dependent hydrolases › YfiT-like putative metal-dependent hydrolases | 0.51 | 41.0 | 3.89e-01 | 90.4% | 96.6% |
| 3392666 | 603.1.1.104 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins › 7tm_7 | 0.51 | 46.0 | 3.22e-01 | 100.0% | 61.1% |