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term6_stool_scaffold_5_prodigal-single.1__X__X__00106

Bact-Vir

term6_stool_scaffold_5_prodigal-single.1__X__X__00106

Identity

Kingdom:
phage

Quality

66.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-89
PDB
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2zgyA02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.60 37.0 3.20e-01 100.0% 37.9%
5bykA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.57 42.0 3.03e-01 79.1% 53.1%
2e9yB00 3.40.1160.10 Alpha Beta › 3-Layer(aba) Sandwich › Carbamate kinase › Acetylglutamate kinase-like 0.55 47.0 3.24e-01 95.3% 92.9%
ECOD (7)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3262959 109.4.1.369 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › SNAPC1 0.55 41.0 3.30e-01 81.4% 45.9%
3810912 185.1.1.1 alpha superhelices › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin-like › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin/Protein HNS-dependent expression A HdeA › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin › Tryp_alpha_amyl 0.54 36.0 4.01e-01 98.8% 90.8%
3826105 185.1.1.0 alpha superhelices › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin-like › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin/Protein HNS-dependent expression A HdeA › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 0.52 35.0 3.82e-01 97.7% 88.4%
3471903 601.1.1.0 alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin 0.52 38.0 3.06e-01 76.7% 87.6%
3388967 109.4.1.369 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › SNAPC1 0.51 40.0 3.39e-01 97.7% 48.4%
5061450 3003.1.1.0 a+b complex topology › N-terminal subdomain in DNA replication initiator (cdc21/cdc54) › N-terminal subdomain in DNA replication initiator (cdc21/cdc54) › N-terminal subdomain in DNA replication initiator (cdc21/cdc54) 0.51 38.0 3.76e-01 82.6% 93.7%
3507044 7568.1.1.20 a/b three-layered sandwiches › BRCT domain › BRCT domain › BRCT domain › PF29099 0.50 38.0 3.67e-01 84.9% 86.0%
D2 high residues 100-141
PDB
Domain cluster: representative
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7dniB01 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.76 54.0 4.27e-01 76.2% 37.1%
1ldjA04 1.20.1310.10 Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats 0.65 48.0 3.76e-01 92.9% 35.7%
3v7dD01 1.20.1280.50 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.64 46.0 3.50e-01 76.2% 35.0%
3htmA02 6.10.250.3030 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.61 45.0 4.66e-01 83.3% 85.0%
4q45A03 1.10.150.20 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain 0.55 39.0 3.72e-01 83.3% 100.0%
ECOD (2)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4890281 4048.1.1.1 alpha bundles › Second alpha-helical domain in heme-dependent catalases › Second alpha-helical domain in heme-dependent catalases › Second alpha-helical domain in heme-dependent catalases › Catalase-rel 0.78 56.0 5.48e-01 78.6% 71.7%
4374496 103.1.1.24 alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › BIRC2-3-like_UBA 0.59 40.0 3.82e-01 85.7% 60.0%