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term6_stool_scaffold_5_prodigal-single.1__X__X__00135
Bact-Virterm6_stool_scaffold_5_prodigal-single.1__X__X__00135
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 7-125
Domain cluster:
representative
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1ynfA00 | 3.75.10.20 | Alpha Beta › 5-stranded Propeller › L-arginine/glycine Amidinotransferase; Chain A › Succinylarginine dihydrolase | 0.55 | 43.0 | 2.92e-01 | 81.5% | 39.6% |
| 3kqxL01 | 3.40.220.10 | Alpha Beta › 3-Layer(aba) Sandwich › Leucine Aminopeptidase, subunit E; domain 1 › Leucine Aminopeptidase, subunit E, domain 1 | 0.54 | 38.0 | 3.33e-01 | 74.8% | 71.8% |
| 2q7sA00 | 3.40.630.40 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn-dependent exopeptidases | 0.54 | 40.0 | 3.15e-01 | 79.8% | 73.4% |
| 7dd9A01 | 3.20.110.10 | Alpha Beta › Alpha-Beta Barrel › 7-stranded beta/alpha barrel › Glycoside hydrolase 38, N terminal domain | 0.52 | 39.0 | 3.03e-01 | 79.0% | 63.3% |
| 3sk1A02 | 3.30.720.110 | Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › | 0.52 | 22.0 | 2.96e-01 | 74.8% | 75.9% |
| 1h70A00 | 3.75.10.10 | Alpha Beta › 5-stranded Propeller › L-arginine/glycine Amidinotransferase; Chain A › L-arginine/glycine Amidinotransferase; Chain A | 0.52 | 39.0 | 3.10e-01 | 79.8% | 56.9% |
| 5ailA00 | 3.40.220.10 | Alpha Beta › 3-Layer(aba) Sandwich › Leucine Aminopeptidase, subunit E; domain 1 › Leucine Aminopeptidase, subunit E, domain 1 | 0.51 | 35.0 | 3.09e-01 | 89.9% | 46.7% |
ECOD (7)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4983855 | 2498.1.1.10 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M48 | 0.58 | 41.0 | 3.46e-01 | 91.6% | 42.6% |
| 5018208 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.56 | 30.0 | 3.21e-01 | 77.3% | 54.6% |
| 4087129 | 2498.1.1.10 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M48 | 0.55 | 41.0 | 3.16e-01 | 91.6% | 33.8% |
| 4930493 | 2498.1.1.10 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M48 | 0.54 | 40.0 | 3.17e-01 | 91.6% | 36.1% |
| 3972552 | 7529.1.1.1 ↗ | a/b three-layered sandwiches › Macro domain-like › Macro domain-like › Macro domain-like › Macro | 0.53 | 37.0 | 3.41e-01 | 72.3% | 85.5% |
| 5042247 | 5104.1.1.1 ↗ | a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA1 | 0.51 | 40.0 | 3.91e-01 | 85.7% | 96.3% |
| 4565599 | 2498.1.1.10 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M48 | 0.50 | 38.0 | 2.93e-01 | 96.6% | 32.7% |
D2
high
residues 127-319
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF25614.2 best | PhiKZ_VTX | 53.8 | 2.50e-14 | 98.5% | 53.5% |
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2iw3A02 | 1.20.1390.20 | Mainly Alpha › Up-down Bundle › PWI domain › | 0.68 | 33.0 | 4.62e-01 | 76.2% | 96.7% |
| 1aisB01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.62 | 28.0 | 3.88e-01 | 72.5% | 81.8% |
| 1yt3A02 | 1.10.150.80 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › HRDC domain | 0.62 | 30.0 | 3.99e-01 | 90.2% | 85.9% |
| 2om6A02 | 1.10.150.400 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › | 0.62 | 28.0 | 4.13e-01 | 81.9% | 100.0% |
| 3h4cA01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.58 | 28.0 | 3.83e-01 | 72.0% | 89.6% |
| 3egoA02 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.58 | 35.0 | 4.29e-01 | 82.9% | 95.0% |
| 5zzjA02 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.56 | 47.0 | 4.06e-01 | 89.6% | 91.4% |
| 1h99A02 | 1.10.1790.10 | Mainly Alpha › Orthogonal Bundle › PTS-regulatory domain, PRD › PRD domain | 0.56 | 27.0 | 3.55e-01 | 76.7% | 81.1% |
| 6ig5A01 | 1.10.275.10 | Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain) | 0.55 | 36.0 | 4.12e-01 | 92.2% | 89.1% |
| 1nigA00 | 1.20.1200.10 | Mainly Alpha › Up-down Bundle › Hypothetical Protein Ta1238; Chain: A; › Cobalamin adenosyltransferase-like | 0.52 | 28.0 | 3.15e-01 | 77.2% | 64.4% |
| 4akgA16 | 1.10.8.720 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Region D6 of dynein motor | 0.51 | 36.0 | 3.91e-01 | 86.5% | 84.2% |
| 1lj8A02 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.51 | 42.0 | 4.11e-01 | 86.5% | 91.8% |
ECOD (17)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3658080 | 101.1.10.1 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N | 0.64 | 32.0 | 3.46e-01 | 78.2% | 53.9% |
| 3738702 | 592.2.1.2 ↗ | alpha arrays › PWI domain-like › YugE-like › YugE-like › WGG | 0.63 | 39.0 | 4.65e-01 | 89.6% | 93.6% |
| 3225186 | 592.2.1.2 ↗ | alpha arrays › PWI domain-like › YugE-like › YugE-like › WGG | 0.61 | 36.0 | 4.53e-01 | 86.0% | 97.4% |
| 3924719 | 371.1.1.0 ↗ | few secondary structure elements › Phospholipase A2, PLA2 › Phospholipase A2, PLA2 › Phospholipase A2, PLA2 | 0.60 | 30.0 | 4.25e-01 | 72.5% | 98.9% |
| 3906133 | 633.21.1.4 ↗ | alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 › Cg6151-P | 0.54 | 32.0 | 3.95e-01 | 76.2% | 96.5% |
| 5020332 | 131.1.1.0 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like | 0.53 | 38.0 | 3.91e-01 | 73.1% | 85.8% |
| 5018143 | 604.39.1.0 ↗ | alpha bundles › Spectrin repeat-like › S-component of energy-coupling factor (ECF) transporters › S-component of energy-coupling factor (ECF) transporters | 0.53 | 40.0 | 4.24e-01 | 78.8% | 98.2% |
| 4953098 | 633.21.1.0 ↗ | alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 | 0.52 | 28.0 | 3.73e-01 | 99.0% | 100.0% |
| 5033594 | 141.1.1.3 ↗ | alpha bundles › Terpenoid synthases › Terpenoid synthases › Terpenoid synthases › UbiA | 0.52 | 46.0 | 3.92e-01 | 98.4% | 96.3% |
| 5033911 | 141.1.1.3 ↗ | alpha bundles › Terpenoid synthases › Terpenoid synthases › Terpenoid synthases › UbiA | 0.52 | 43.0 | 3.71e-01 | 89.1% | 98.0% |
| 4084745 | 141.1.1.3 ↗ | alpha bundles › Terpenoid synthases › Terpenoid synthases › Terpenoid synthases › UbiA | 0.51 | 43.0 | 3.78e-01 | 89.6% | 93.1% |
| 5034469 | 141.1.1.3 ↗ | alpha bundles › Terpenoid synthases › Terpenoid synthases › Terpenoid synthases › UbiA | 0.51 | 43.0 | 3.70e-01 | 92.2% | 96.4% |
| 3812516 | 131.1.1.15 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › Ppx-GppA_III | 0.51 | 40.0 | 3.90e-01 | 97.9% | 74.8% |
| 5034896 | 141.1.1.3 ↗ | alpha bundles › Terpenoid synthases › Terpenoid synthases › Terpenoid synthases › UbiA | 0.51 | 45.0 | 3.82e-01 | 97.9% | 97.0% |
| 4977753 | 141.1.1.3 ↗ | alpha bundles › Terpenoid synthases › Terpenoid synthases › Terpenoid synthases › UbiA | 0.51 | 42.0 | 3.76e-01 | 89.6% | 95.4% |
| 3472681 | 141.1.1.3 ↗ | alpha bundles › Terpenoid synthases › Terpenoid synthases › Terpenoid synthases › UbiA | 0.51 | 38.0 | 3.80e-01 | 78.2% | 91.7% |
| 3810077 | 310.2.1.0 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF | 0.50 | 32.0 | 3.54e-01 | 73.6% | 78.7% |