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term6_stool_scaffold_5_prodigal-single.1__X__X__00181

Bact-Vir

term6_stool_scaffold_5_prodigal-single.1__X__X__00181

Identity

Kingdom:
phage

Quality

88.4 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 82-149
PDB
Domain cluster: representative
CATH (54)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2qkdA01 2.20.25.420 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ZPR1, zinc finger domain 0.77 42.0 4.92e-01 73.5% 77.1%
1nh2C00 2.30.18.10 Mainly Beta › Roll › TATA box binding Protein, subunit D; domain 2 › Transcription factor IIA (TFIIA), beta-barrel domain 0.67 39.0 4.48e-01 72.1% 80.0%
3eyrA00 3.15.10.40 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › Uncharacterised protein PF07273 family, DUF1439 0.66 45.0 3.37e-01 79.4% 28.4%
3ub1A01 3.10.450.540 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.66 49.0 3.94e-01 80.9% 41.9%
1v1qA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.65 46.0 3.94e-01 76.5% 46.4%
3f7xA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.64 47.0 3.83e-01 79.4% 40.6%
3k8aB00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.62 42.0 3.68e-01 70.6% 45.6%
1owfA00 4.10.520.10 Few Secondary Structures › Irregular › HU Protein; Chain A › IHF-like DNA-binding proteins 0.62 45.0 4.05e-01 82.4% 55.2%
2rttA00 2.60.40.290 Mainly Beta › Sandwich › Immunoglobulin-like › 0.62 44.0 3.79e-01 75.0% 82.9%
1fx3B00 3.10.420.10 Alpha Beta › Roll › Bacterial Protein-export protein SecB › SecB-like 0.61 44.0 3.36e-01 79.4% 34.2%
2il5A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.61 38.0 2.86e-01 76.5% 26.5%
3ff2A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.61 40.0 3.44e-01 82.4% 40.2%
2iieA01 4.10.520.10 Few Secondary Structures › Irregular › HU Protein; Chain A › IHF-like DNA-binding proteins 0.61 44.0 3.87e-01 82.4% 50.0%
7rskA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 43.0 3.66e-01 75.0% 67.0%
1z52A02 3.30.412.10 Alpha Beta › 2-Layer Sandwich › Proaerolysin; Chain A, domain 2 › Proaerolysin, chain A, domain 2 0.60 46.0 3.39e-01 80.9% 56.1%
1ek9A00 1.20.1600.10 Mainly Alpha › Up-down Bundle › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) 0.60 46.0 2.85e-01 85.3% 59.8%
3fn9A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 44.0 3.62e-01 79.4% 64.2%
3aabB00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.58 39.0 3.38e-01 76.5% 44.3%
1i2kA01 3.30.470.10 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › Aminotransferase class 4, branched-chain amino acid transferase, N-terminal domain 0.58 41.0 3.46e-01 73.5% 80.6%
3o0lA00 2.60.40.3230 Mainly Beta › Sandwich › Immunoglobulin-like › 0.57 43.0 3.68e-01 80.9% 82.6%
3aa0B02 3.90.1150.210 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit 0.57 49.0 3.63e-01 91.2% 57.4%
6f1uK02 3.90.1150.210 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit 0.56 43.0 3.31e-01 80.9% 46.2%
2vf9A00 3.30.380.10 Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein 0.56 45.0 3.61e-01 86.8% 52.7%
3exzB00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.56 36.0 2.87e-01 75.0% 30.6%
1xkwA02 2.40.170.20 Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain 0.56 50.0 2.96e-01 100.0% 46.4%
2q1zB02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.56 39.0 3.54e-01 73.5% 90.3%
4f80A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 39.0 3.53e-01 73.5% 69.9%
3anzC00 2.70.240.10 Mainly Beta › Distorted Sandwich › Leukocidin-like › Leukocidin/porin MspA 0.56 42.0 2.80e-01 80.9% 73.1%
3butA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 42.0 3.46e-01 80.9% 65.6%
1uunA01 2.60.40.1650 Mainly Beta › Sandwich › Immunoglobulin-like › Porin MspA (Ig-like beta-sandwich domain) 0.56 41.0 3.38e-01 80.9% 78.8%
3qwnA02 2.60.40.2370 Mainly Beta › Sandwich › Immunoglobulin-like › NigD-like, C-terminal beta sandwich domain 0.55 40.0 3.22e-01 76.5% 53.7%
2pfcA00 3.10.129.30 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Rv0098, thioesterase-like hot dog domain 0.55 44.0 3.35e-01 86.8% 80.6%
2opkB01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.55 39.0 3.54e-01 75.0% 100.0%
2ndpA00 4.10.520.10 Few Secondary Structures › Irregular › HU Protein; Chain A › IHF-like DNA-binding proteins 0.55 39.0 3.49e-01 77.9% 51.5%
2dh2A02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.55 41.0 3.75e-01 79.4% 91.2%
4bj8K00 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.55 39.0 3.29e-01 91.2% 43.3%
3d2uA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 41.0 3.69e-01 79.4% 77.2%
3uezC02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 42.0 3.90e-01 80.9% 69.9%
3rnsA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.54 39.0 3.42e-01 75.0% 88.0%
6c98A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 39.0 3.59e-01 77.9% 75.8%
2q2eB05 2.60.40.2960 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 38.0 3.48e-01 75.0% 80.2%
3pg6B00 3.30.390.130 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › 0.54 44.0 3.48e-01 88.2% 87.3%
4n1vA00 4.10.520.10 Few Secondary Structures › Irregular › HU Protein; Chain A › IHF-like DNA-binding proteins 0.54 37.0 3.40e-01 77.9% 53.8%
4a18O00 3.30.390.110 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › 0.53 37.0 2.96e-01 75.0% 36.6%
5axmB00 3.30.70.3000 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › tRNA(His) guanylyltransferase (Thg1) 0.53 37.0 2.57e-01 73.5% 69.9%
3w1zC00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 43.0 3.48e-01 89.7% 80.8%
4fekB00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.53 43.0 3.05e-01 95.6% 48.8%
4w78G00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.53 39.0 3.05e-01 82.4% 79.1%
3v8uA01 2.40.128.250 Mainly Beta › Beta Barrel › Lipocalin › 0.53 38.0 3.19e-01 77.9% 52.5%
1y5oA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 38.0 3.22e-01 77.9% 45.2%
6lmjB00 4.10.520.10 Few Secondary Structures › Irregular › HU Protein; Chain A › IHF-like DNA-binding proteins 0.52 38.0 3.48e-01 82.4% 59.2%
8dqwG01 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.52 37.0 2.75e-01 76.5% 73.1%
1kdgA02 3.30.410.10 Alpha Beta › 2-Layer Sandwich › Cholesterol Oxidase; domain 2 › Cholesterol Oxidase; domain 2 0.51 37.0 2.74e-01 77.9% 69.6%
2w4yA00 2.40.160.220 Mainly Beta › Beta Barrel › Porin › 0.51 40.0 3.33e-01 86.8% 53.3%
ECOD (52)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4162701 243.1.1.76 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › PF25976 0.69 48.0 3.99e-01 76.5% 41.7%
3284889 243.1.1.76 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › PF25976 0.69 48.0 4.01e-01 77.9% 41.7%
3405436 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.69 44.0 3.73e-01 76.5% 39.1%
4049368 243.1.1.76 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › PF25976 0.68 50.0 4.23e-01 79.4% 50.4%
3724449 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.64 47.0 4.29e-01 80.9% 58.9%
1322956 9.25.1.1 beta barrels › Lipocalins/Streptavidin › Uncharacterized protein BACOVA_03322 C-terminal domain › Uncharacterized protein BACOVA_03322 C-terminal domain › BT_3044-like_C 0.63 48.0 3.71e-01 85.3% 41.2%
4240651 101.17.1.1 alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins › Bac_DNA_binding 0.62 45.0 4.01e-01 80.9% 53.0%
3373981 206.1.1.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.62 44.0 2.98e-01 79.4% 22.7%
4958461 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.62 44.0 4.02e-01 77.9% 56.7%
3489971 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.60 42.0 3.55e-01 75.0% 44.2%
5075730 3435.1.1.0 a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC 0.60 45.0 3.74e-01 79.4% 47.8%
3933957 4051.1.1.1 a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz › F_actin_cap_B 0.60 49.0 3.63e-01 86.8% 55.0%
4520610 5085.1.1.1 a+b duplicates or obligate multimers › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › OEP 0.59 44.0 2.77e-01 82.4% 60.2%
4954093 2.1.1.76 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › REPA_OB_2 0.59 35.0 2.90e-01 72.1% 32.0%
4170378 2.1.1.6 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB 0.59 39.0 3.27e-01 70.6% 40.0%
4305190 230.1.1.5 a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › GCHY-1 0.59 43.0 3.44e-01 76.5% 89.2%
4236774 230.1.1.5 a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › GCHY-1 0.59 42.0 3.46e-01 76.5% 92.0%
3179194 12.6.1.0 beta sandwiches › Glycosyl hydrolase domain-like › Glycoside hydrolase family 127 middle domain-related › Glycoside hydrolase family 127 middle domain-related 0.59 41.0 3.90e-01 73.5% 88.7%
3635930 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.58 38.0 2.96e-01 79.4% 29.7%
3949218 5085.1.1.1 a+b duplicates or obligate multimers › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › OEP 0.57 44.0 2.73e-01 85.3% 57.3%
4133928 230.1.1.5 a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › GCHY-1 0.57 42.0 3.44e-01 76.5% 92.5%
4681823 101.17.1.1 alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins › Bac_DNA_binding 0.57 42.0 3.79e-01 85.3% 55.0%
4354607 230.1.1.5 a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › GCHY-1 0.57 41.0 3.44e-01 76.5% 92.5%
5050158 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.57 40.0 2.94e-01 73.5% 29.4%
4955607 3435.1.1.0 a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC 0.57 50.0 3.54e-01 100.0% 70.2%
3631248 220.1.1.20 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_TFIIH 0.57 41.0 3.36e-01 77.9% 41.6%
3994274 5084.5.1.0 beta barrels › Outer membrane meander beta-barrels › Porins › Porin 0.57 38.0 2.49e-01 72.1% 18.5%
3706182 3270.1.1.0 a+b two layers › a+b domain in heme oxygenase › a+b domain in heme oxygenase › a+b domain in heme oxygenase 0.56 40.0 3.55e-01 75.0% 68.0%
4320352 5085.1.1.1 a+b duplicates or obligate multimers › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › OEP 0.56 43.0 2.71e-01 85.3% 58.1%
169039 265.1.1.1 a+b two layers › RNA bacteriophage capsid protein › RNA bacteriophage capsid protein › RNA bacteriophage capsid protein › Levi_coat 0.56 45.0 3.61e-01 86.8% 52.7%
4103146 241.1.1.17 a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone › RM5_Med14 0.56 42.0 3.67e-01 80.9% 53.3%
5077779 2003.1.5.18 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › BpsA_C 0.55 40.0 2.77e-01 77.9% 75.8%
3887250 11.1.1.640 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › ZP-N 0.55 40.0 3.48e-01 76.5% 74.3%
3736331 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.55 41.0 2.63e-01 83.8% 43.9%
3173251 4051.1.1.1 a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz › F_actin_cap_B 0.55 42.0 3.10e-01 80.9% 40.0%
1916727 101.17.1.1 alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins › Bac_DNA_binding 0.55 39.0 3.49e-01 77.9% 51.5%
3967497 5085.1.1.1 a+b duplicates or obligate multimers › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › OEP 0.55 43.0 2.70e-01 86.8% 61.7%
1168678 5084.5.1.4 beta barrels › Outer membrane meander beta-barrels › Porins › Porin › OprD 0.55 40.0 4.33e-01 77.9% 100.0%
4093339 5085.1.1.1 a+b duplicates or obligate multimers › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › OEP 0.55 42.0 2.57e-01 82.4% 58.9%
3978125 5085.1.1.1 a+b duplicates or obligate multimers › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › OEP 0.55 42.0 2.67e-01 86.8% 59.3%
4356691 11.1.1.929 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF28202 0.55 41.0 3.20e-01 80.9% 74.0%
314893 10.12.1.39 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 0.54 40.0 3.40e-01 77.9% 87.4%
2773776 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 36.0 4.04e-01 73.5% 90.2%
3991835 331.3.1.3 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › START 0.54 44.0 3.54e-01 89.7% 59.3%
5027634 10.12.1.39 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 0.54 37.0 3.27e-01 72.1% 93.0%
3192705 304.112.1.2 a+b two layers › Alpha-beta plaits › Argonaute, N-terminal domain › Argonaute, N-terminal domain 0.53 42.0 3.08e-01 86.8% 44.9%
3825482 330.7.1.0 a+b two layers › dsRBD-like › PI-Pfui intein middle domain › PI-Pfui intein middle domain 0.53 40.0 3.79e-01 85.3% 70.6%
2792216 922.1.1.1 few secondary structure elements › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP_1 0.52 38.0 4.03e-01 76.5% 91.4%
3169657 4099.1.1.47 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › PF30282 0.51 36.0 3.16e-01 76.5% 68.7%
3576101 304.112.1.0 a+b two layers › Alpha-beta plaits › Argonaute, N-terminal domain › Argonaute, N-terminal domain 0.51 38.0 3.12e-01 85.3% 59.3%
3794270 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 38.0 3.60e-01 82.4% 90.6%
4985492 2484.1.1.59 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › NurA 0.50 36.0 2.39e-01 75.0% 19.6%