terminase_DNA_binding_subunit_2

Euk-Vir

Phascolarctid_gammaherpesvirus_1

terminase_DNA_binding_subunit_2__YP_010087455__Phascolarctid_gammaherpesvirus_1__2249313

Identity

78.9 mean pLDDT

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Manticavirus› Phascolarctid_gammaherpesvirus_1

TaxID: 2249313

View cluster (77 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 223-236_253-360

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01366.24 best	PRTP	65.1	5.10e-18	97.5%	17.1%

CATH (3)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
7drjB01	1.20.120.1760	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CDP-alcohol phosphotransferase transmembrane (TM) domain	0.56	41.0	3.54e-01	75.4%	91.8%
6qumA04	1.10.1140.10	Mainly Alpha › Orthogonal Bundle › Bovine Mitochondrial F1-ATPase, ATP Synthase Beta Chain; Chain D, domain3 › Bovine Mitochondrial F1-atpase; Atp Synthase Beta Chain; Chain D, domain 3	0.53	40.0	3.80e-01	80.3%	79.9%
2auaA02	1.10.3800.10	Mainly Alpha › Orthogonal Bundle › ADP-ribosylation fold › ADP-ribosylation domain	0.50	28.0	3.25e-01	77.0%	73.6%

D2 medium residues 1-115

PDB

Domain cluster: rep: transport_protein__YP_004207847__Cricetid_gammaherpesvirus_2__1605972__D1-97

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01366.24 best	PRTP	75.3	4.40e-21	99.1%	18.1%

D3 medium residues 116-215_467-487

PDB

Domain cluster: rep: ORF3__NP_733855__Callitrichine_gammaherpesvirus_3__106331__D95-203_456-481

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01366.24 best	PRTP	111.2	6.00e-32	83.5%	15.1%

D4 medium residues 361-386_436-466

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01366.24 best	PRTP	26.8	2.00e-06	59.7%	5.0%

CATH (1)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1fp1D02	3.40.50.150	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39	0.61	51.0	3.41e-01	94.7%	91.5%

D5 medium residues 488-678

PDB

Domain cluster: rep: DNA_packaging_terminase_subunit_2__YP_081515__Human_betaherpesvirus_5__10359__D575-765

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01366.24 best	PRTP	122.8	1.80e-35	60.2%	16.5%