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tgb2

Euk-Vir

Tamus_red_mosaic_virus

tgb2__YP_004849316__Tamus_red_mosaic_virus__1081702

Identity

Accession:
YP_004849316 ↗
Protein ID:
tgb2
Kingdom:
euk

Quality

72.7 mean pLDDT

Taxonomy

Orthornavirae› Kitrinoviricota› Alsuviricetes› Tymovirales› Alphaflexiviridae› Potexvirus› Tamus_red_mosaic_virus

TaxID: 1081702

Cluster

View cluster (82 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 15-103
PDB
Domain cluster: rep: Second_triple_gene_block_gene__NP_612612__Beet_virus_Q__71972__D34-99
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF01307.23 best Plant_vir_prot 90.1 1.40e-25 100.0% 89.0%
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1ewqA04 1.10.1420.10 Mainly Alpha › Orthogonal Bundle › MutS, DNA mismatch repair protein; Chain A, domain 3 › 0.64 50.0 4.40e-01 85.4% 100.0%
1fxkC00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.63 51.0 4.52e-01 89.9% 92.5%
1fxkB00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.57 51.0 4.78e-01 98.9% 100.0%
5yk4A04 1.10.1420.10 Mainly Alpha › Orthogonal Bundle › MutS, DNA mismatch repair protein; Chain A, domain 3 › 0.57 42.0 3.70e-01 78.7% 100.0%
3qthB00 1.20.120.450 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain 0.55 46.0 3.78e-01 91.0% 69.5%
2obpA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 27.0 2.81e-01 89.9% 49.4%
2felA00 1.20.200.10 Mainly Alpha › Up-down Bundle › Fumarase C; Chain A, domain 2 › Fumarase/aspartase (Central domain) 0.54 46.0 3.15e-01 94.4% 34.4%
5b7hB01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.53 24.0 2.32e-01 82.0% 31.5%
1vkcA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.52 30.0 2.58e-01 89.9% 33.8%
3oduB01 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.52 44.0 3.21e-01 100.0% 31.8%
3aeiA00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.51 41.0 4.11e-01 91.0% 100.0%
4e1oA03 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.50 33.0 3.23e-01 94.4% 61.2%
1s12A00 3.30.70.1490 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Cysteine protease Prp 0.50 35.0 3.51e-01 75.3% 69.1%
ECOD (65)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5054049 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.64 53.0 4.86e-01 89.9% 95.7%
4135238 601.23.1.4 ↗ alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › MutS_IV, MutS_III 0.63 51.0 3.66e-01 91.0% 48.3%
5035139 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.63 53.0 4.57e-01 91.0% 81.3%
4494181 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.63 52.0 4.46e-01 91.0% 88.3%
4942428 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.63 52.0 4.51e-01 89.9% 91.9%
3603899 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.62 52.0 4.53e-01 91.0% 83.7%
4994900 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.62 52.0 4.61e-01 89.9% 99.2%
4626792 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.62 52.0 4.40e-01 91.0% 87.6%
3800501 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.62 52.0 4.40e-01 91.0% 90.3%
4532543 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.62 51.0 4.40e-01 89.9% 88.6%
5048161 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.62 51.0 4.42e-01 91.0% 90.7%
5027984 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.61 50.0 4.57e-01 89.9% 98.3%
5056505 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.61 51.0 4.71e-01 91.0% 96.5%
3519635 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.61 51.0 4.73e-01 89.9% 99.1%
4515483 601.23.1.4 ↗ alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › MutS_IV, MutS_III 0.61 51.0 3.60e-01 95.5% 44.8%
4661346 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.61 51.0 4.33e-01 91.0% 87.6%
4993906 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.61 51.0 4.37e-01 91.0% 90.7%
5008906 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.61 50.0 4.30e-01 91.0% 87.6%
5029396 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.61 51.0 4.66e-01 91.0% 98.3%
5041857 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.60 50.0 4.31e-01 89.9% 100.0%
5079691 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.60 50.0 4.37e-01 91.0% 94.1%
4265142 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.60 54.0 4.54e-01 100.0% 92.0%
4600010 601.23.1.4 ↗ alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › MutS_IV, MutS_III 0.60 49.0 3.45e-01 91.0% 45.9%
5062471 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.60 49.0 4.56e-01 87.6% 91.8%
4457710 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.60 50.0 4.53e-01 91.0% 86.7%
4938398 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.60 50.0 4.24e-01 91.0% 77.9%
4934732 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.60 47.0 4.29e-01 85.4% 99.2%
4155387 601.23.1.4 ↗ alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › MutS_IV, MutS_III 0.60 47.0 3.30e-01 87.6% 45.0%
4206083 601.23.1.4 ↗ alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › MutS_IV, MutS_III 0.60 49.0 3.44e-01 91.0% 49.0%
3600702 601.23.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III 0.59 47.0 3.32e-01 87.6% 47.9%
3254236 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.59 47.0 4.49e-01 86.5% 93.3%
4981980 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.59 49.0 4.55e-01 91.0% 90.4%
5022380 3755.3.1.632 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › Prefoldin 0.59 48.0 4.22e-01 91.0% 86.4%
5038348 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.59 49.0 4.23e-01 91.0% 90.7%
5074454 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.58 47.0 4.29e-01 89.9% 97.5%
3506058 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.58 46.0 4.46e-01 87.6% 100.0%
4951472 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.57 47.0 4.02e-01 91.0% 93.3%
4976532 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.57 46.0 4.08e-01 87.6% 93.1%
3290393 109.4.1.192 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_8 0.57 44.0 3.07e-01 83.1% 34.4%
4569662 601.23.1.4 ↗ alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › MutS_IV, MutS_III 0.57 46.0 3.26e-01 91.0% 43.9%
4936526 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.57 46.0 4.02e-01 89.9% 98.6%
5032057 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.56 47.0 4.32e-01 94.4% 100.0%
4969654 601.23.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III 0.56 46.0 3.30e-01 92.1% 42.8%
3258549 601.23.1.4 ↗ alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › MutS_IV, MutS_III 0.56 45.0 3.14e-01 91.0% 40.0%
4680501 601.23.1.4 ↗ alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › MutS_IV, MutS_III 0.55 45.0 3.18e-01 91.0% 79.7%
4971920 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.55 46.0 4.15e-01 92.1% 100.0%
5079975 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.55 46.0 3.96e-01 94.4% 92.4%
4941487 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.55 45.0 4.12e-01 91.0% 89.2%
4989009 2484.1.1.331 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MutS_III 0.55 45.0 2.99e-01 94.4% 30.5%
3270591 601.23.1.4 ↗ alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › MutS_IV, MutS_III 0.54 45.0 3.20e-01 94.4% 44.5%
3859690 601.23.1.4 ↗ alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › MutS_IV, MutS_III 0.54 45.0 3.19e-01 96.6% 45.3%
4084820 601.23.1.4 ↗ alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › MutS_IV, MutS_III 0.54 47.0 3.31e-01 97.8% 65.9%
5053627 601.23.1.1 ↗ alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › MutS_III 0.54 43.0 3.12e-01 91.0% 66.7%
5040546 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.54 46.0 3.95e-01 98.9% 92.2%
3508465 601.23.1.4 ↗ alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › MutS_IV, MutS_III 0.54 43.0 3.22e-01 91.0% 55.4%
3789210 601.23.1.1 ↗ alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › MutS_III 0.54 45.0 3.15e-01 95.5% 44.1%
4252702 601.23.1.4 ↗ alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › MutS_IV, MutS_III 0.53 42.0 3.03e-01 89.9% 57.0%
4159140 601.23.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III 0.52 41.0 2.69e-01 89.9% 82.9%
4076057 601.23.1.4 ↗ alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › MutS_IV, MutS_III 0.52 45.0 3.15e-01 97.8% 63.2%
4485921 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.52 43.0 3.94e-01 91.0% 82.5%
3472013 601.23.1.1 ↗ alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › MutS_III 0.51 44.0 3.08e-01 100.0% 42.5%
5036589 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.51 42.0 3.82e-01 98.9% 95.6%
54690 601.23.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III 0.51 44.0 3.16e-01 97.8% 67.3%
3972874 7523.1.1.15 ↗ a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › LysR_substrate 0.51 23.0 2.21e-01 93.3% 30.9%
None — 0.51 44.0 2.67e-01 100.0% 27.5%