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tgb3
Euk-VirAllium_virus_X
tgb3__YP_002647030__Allium_virus_X__317027
Identity
- Accession:
- YP_002647030 ↗
- Protein ID:
- tgb3
- Kingdom:
- euk
Quality
70.8
mean pLDDT
Taxonomy
Orthornavirae›
Kitrinoviricota›
Alsuviricetes›
Tymovirales›
Alphaflexiviridae›
Potexvirus›
Potexvirus_ecsallii
TaxID: 317027
Cluster
View cluster (2 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 32-64
Domain cluster:
representative
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4jgiB02 | 3.40.50.280 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Cobalamin-binding domain | 0.60 | 47.0 | 3.34e-01 | 100.0% | 66.7% |
| 4kzsA03 | 3.30.160.710 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.60 | 41.0 | 3.19e-01 | 81.8% | 30.9% |
| 2frnA01 | 3.30.300.110 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › Met-10+ protein-like domains | 0.57 | 44.0 | 3.95e-01 | 100.0% | 62.5% |
| 2r7rA07 | 3.30.230.140 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › | 0.57 | 42.0 | 2.99e-01 | 81.8% | 97.5% |
| 3uenA02 | 3.40.50.10190 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › BRCT domain | 0.57 | 40.0 | 3.07e-01 | 93.9% | 30.5% |
| 3ej3C00 | 3.30.429.10 | Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor | 0.54 | 36.0 | 3.31e-01 | 84.8% | 64.1% |
| 5anpA00 | 3.10.310.50 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › | 0.54 | 40.0 | 2.80e-01 | 97.0% | 57.2% |
| 4ncbA05 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.53 | 35.0 | 2.64e-01 | 97.0% | 58.5% |
ECOD (7)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3572134 | 7568.1.1.1 ↗ | a/b three-layered sandwiches › BRCT domain › BRCT domain › BRCT domain › BRCT | 0.57 | 40.0 | 3.07e-01 | 93.9% | 29.1% |
| 3506890 | 7568.1.1.1 ↗ | a/b three-layered sandwiches › BRCT domain › BRCT domain › BRCT domain › BRCT | 0.57 | 40.0 | 3.11e-01 | 90.9% | 30.0% |
| 4236369 | 7568.1.1.2 ↗ | a/b three-layered sandwiches › BRCT domain › BRCT domain › BRCT domain › PTCB-BRCT | 0.56 | 40.0 | 3.04e-01 | 93.9% | 29.1% |
| 3508636 | 2003.1.1.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains | 0.55 | 38.0 | 2.79e-01 | 87.9% | 20.8% |
| 3737313 | 7568.1.1.2 ↗ | a/b three-layered sandwiches › BRCT domain › BRCT domain › BRCT domain › PTCB-BRCT | 0.55 | 38.0 | 2.99e-01 | 90.9% | 30.0% |
| 4949538 | 2008.2.1.1 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like › tRNA_int_endo | 0.54 | 36.0 | 2.94e-01 | 100.0% | 49.5% |
| 4927752 | 3703.1.1.0 ↗ | a/b three-layered sandwiches › HSP90 C-terminal a/b domain › HSP90 C-terminal a/b domain › HSP90 C-terminal a/b domain | 0.51 | 36.0 | 2.83e-01 | 84.8% | 27.0% |