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thymidine_kinase,_partial
Euk-VirHawaiian_green_turtle_herpesvirus
thymidine_kinase,_partial__YP_009207083__Hawaiian_green_turtle_herpesvirus__70564
Identity
- Accession:
- YP_009207083 ↗
- Protein ID:
- thymidine_kinase,_partial
- Kingdom:
- euk
Quality
81.5
mean pLDDT
Taxonomy
Heunggongvirae›
Peploviricota›
Herviviricetes›
Herpesvirales›
Orthoherpesviridae›
Scutavirus›
Hawaiian_green_turtle_herpesvirus
TaxID: 70564
Cluster
View cluster (35 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 30-121_136-215
Domain cluster:
rep: thymidine_kinase__YP_009230154__Leporid_alphaherpesvirus_4__481315__D1-149_256-295
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01712.26 best | dNK | 39.8 | 6.00e-10 | 99.4% | 73.4% |
| PF00693.25 | Herpes_TK | 90.3 | 1.90e-25 | 95.9% | 63.2% |
D2
medium
residues 216-317
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00693.25 best | Herpes_TK | 40.2 | 3.40e-10 | 99.0% | 34.6% |
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1osnC00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.90 | 84.0 | 5.71e-01 | 100.0% | 31.9% |
| 1p72A00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.89 | 84.0 | 5.66e-01 | 100.0% | 31.3% |
| 1e2jA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.88 | 69.0 | 4.76e-01 | 100.0% | 27.1% |
| 2vixA03 | 1.20.1280.240 | Mainly Alpha › Up-down Bundle › Monooxygenase › | 0.53 | 31.0 | 3.05e-01 | 93.1% | 52.2% |
| 2xs6A00 | 1.10.555.10 | Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase; Chain A › Rho GTPase activation protein | 0.51 | 40.0 | 3.44e-01 | 85.3% | 97.0% |
ECOD (6)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 9546 | 2004.1.1.52 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Herpes_TK | 0.90 | 84.0 | 5.66e-01 | 100.0% | 30.8% |
| 9545 | 2004.1.1.52 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Herpes_TK | 0.89 | 84.0 | 5.63e-01 | 100.0% | 30.3% |
| 1322887 | 2004.1.1.52 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Herpes_TK | 0.89 | 70.0 | 4.78e-01 | 100.0% | 27.1% |
| 4978468 | 5050.1.1.10 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_2 | 0.57 | 41.0 | 3.22e-01 | 75.5% | 73.6% |
| 4581675 | 1079.1.1.14 ↗ | alpha complex topology › Transmembrane reductase CcdA › Transmembrane reductase CcdA › Transmembrane reductase CcdA › MarC | 0.55 | 47.0 | 3.81e-01 | 95.1% | 85.9% |
| 3436235 | 4121.1.1.0 ↗ | a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like | 0.51 | 36.0 | 3.09e-01 | 94.1% | 42.8% |