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thymidine_kinase
Euk-VirElephant_endotheliotropic_herpesvirus_4
thymidine_kinase__YP_009179316__Elephant_endotheliotropic_herpesvirus_4__548914
Identity
- Accession:
- YP_009179316 ↗
- Protein ID:
- thymidine_kinase
- Kingdom:
- euk
Quality
74.8
mean pLDDT
Taxonomy
Heunggongvirae›
Peploviricota›
Herviviricetes›
Herpesvirales›
Orthoherpesviridae›
Proboscivirus›
Elephant_endotheliotropic_herpesvirus_4
TaxID: 548914
Cluster
View cluster (88 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 50-162_188-242_263-274_304-335
Domain cluster:
rep: thymidine_kinase__YP_009052001__Elephant_endotheliotropic_herpesvirus_5__768738__D59-313
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01712.26 best | dNK | 31.7 | 1.80e-07 | 38.7% | 28.6% |
D2
medium
residues 163-187_275-303
Domain cluster:
representative
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6gy8A01 | 1.20.1170.10 | Mainly Alpha › Up-down Bundle › Hemolysin E; Chain: A; › | 0.65 | 49.0 | 3.11e-01 | 88.9% | 69.0% |
| 2ld7B00 | 1.20.1160.11 | Mainly Alpha › Up-down Bundle › Paired amphipathic helix 2 (pah2 repeat) › Paired amphipathic helix | 0.64 | 41.0 | 3.65e-01 | 100.0% | 46.7% |
| 1chuA03 | 1.20.58.100 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain | 0.62 | 46.0 | 4.02e-01 | 83.3% | 79.5% |
| 1c1kA02 | 1.10.220.50 | Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › Bacteriophage T4, Gp59, helicase assembly protein, C-terminal domain | 0.60 | 46.0 | 3.56e-01 | 81.5% | 99.1% |
| 3ls9A02 | 3.20.20.140 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases | 0.56 | 49.0 | 3.04e-01 | 100.0% | 41.0% |
| 2mqkA00 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.55 | 41.0 | 3.88e-01 | 100.0% | 67.7% |
| 1np7A02 | 1.25.40.80 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.55 | 45.0 | 3.66e-01 | 100.0% | 68.9% |
| 3mxtA02 | 3.30.1300.10 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › Pantoate-beta-alanine ligase, C-terminal domain | 0.51 | 42.0 | 3.52e-01 | 98.1% | 65.0% |
| 2crqA01 | 3.30.110.10 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Translation initiation factor 3 (IF-3), C-terminal domain | 0.50 | 43.0 | 3.74e-01 | 100.0% | 69.8% |
ECOD (7)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3572422 | 386.1.1.103 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-CCCH | 0.59 | 41.0 | 4.08e-01 | 72.2% | 100.0% |
| 3599703 | 109.4.1.1775 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DUF5393 | 0.56 | 46.0 | 3.34e-01 | 100.0% | 47.0% |
| 5026673 | 187.1.1.1 ↗ | alpha arrays › alpha-helical ferredoxin-like › alpha-helical ferredoxin › alpha-helical ferredoxin › Fer4_8 | 0.56 | 43.0 | 3.84e-01 | 94.4% | 75.6% |
| 1563574 | 101.1.4.0 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like | 0.55 | 41.0 | 3.88e-01 | 100.0% | 67.7% |
| 5010525 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.53 | 43.0 | 3.80e-01 | 88.9% | 77.2% |
| 3218916 | 614.1.1.1 ↗ | alpha duplicates or obligate multimers › L27 domain › L27 domain › L27 domain › L27 | 0.52 | 35.0 | 3.43e-01 | 70.4% | 83.3% |
| 146963 | 3185.1.1.1 ↗ | a+b two layers › uncharacterized protein Svir_20580 › uncharacterized protein Svir_20580 › uncharacterized protein Svir_20580 › zf-HC3 | 0.50 | 38.0 | 3.18e-01 | 90.7% | 93.7% |