thymidine_kinase

Euk-Vir

Macropodid_alphaherpesvirus_1

thymidine_kinase__YP_009227256__Macropodid_alphaherpesvirus_1__137443

Identity

89.7 mean pLDDT

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Simplexvirus› Macropodid_alphaherpesvirus_1

TaxID: 137443

View cluster (35 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 33-53_66-86_142-178_193-326

PDB

Domain cluster: rep: thymidina_kinase__YP_009664657__Bubaline_alphaherpesvirus_1__202910__D121-329

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00693.25 best	Herpes_TK	124.6	6.40e-36	73.7%	61.8%

D2 medium residues 54-65_87-141_179-192_327-353

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00693.25 best	Herpes_TK	26.8	4.20e-06	61.1%	17.1%

CATH (9)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3e9lA02	1.20.80.40	Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein › Prp8 RNase H domain, fingers region	0.65	38.0	4.10e-01	99.1%	66.3%
2cteA01	3.30.1370.10	Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1	0.55	35.0	3.97e-01	96.3%	87.3%
3cjnA00	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.54	39.0	3.51e-01	74.1%	97.3%
3mk7C01	6.10.280.130	Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.54	32.0	3.46e-01	83.3%	68.1%
3fryA01	3.30.70.100	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits ›	0.53	27.0	3.32e-01	88.0%	78.1%
4r24B00	1.10.1660.10	Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 ›	0.53	28.0	3.16e-01	100.0%	64.7%
2qndA02	3.30.1370.10	Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1	0.51	35.0	3.97e-01	95.4%	95.0%
3broD00	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.51	36.0	3.35e-01	72.2%	90.3%
3spcA02	1.10.287.70	Mainly Alpha › Orthogonal Bundle › Helix Hairpins ›	0.50	37.0	3.59e-01	78.7%	70.9%

ECOD (8)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4588083	327.16.1.15 ↗	a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif II in type III secretion system › Ring-building motif II in type III secretion system › Secretin_N_2	0.65	39.0	4.82e-01	96.3%	98.5%
3387161	327.16.1.0 ↗	a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif II in type III secretion system › Ring-building motif II in type III secretion system	0.58	38.0	4.52e-01	95.4%	97.3%
3522222	5001.1.1.43 ↗	alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › V1R	0.56	46.0	3.72e-01	88.9%	79.8%
3829362	5059.1.1.1 ↗	alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA	0.55	38.0	2.74e-01	72.2%	79.1%
167429	101.1.2.15 ↗	alpha arrays › HTH › HTH › winged helix domain › MarR	0.54	39.0	3.51e-01	74.1%	97.3%
3924002	327.11.2.0 ↗	a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I)	0.53	33.0	3.99e-01	95.4%	97.1%
4132207	101.1.2.15 ↗	alpha arrays › HTH › HTH › winged helix domain › MarR	0.53	40.0	3.68e-01	80.6%	90.3%
3815375	5069.1.3.17 ↗	alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits › DUF679	0.52	34.0	3.15e-01	83.3%	50.7%