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thymidine_kinase
Euk-VirRhinolophus_gammaherpesvirus_1
thymidine_kinase__YP_009551831__Rhinolophus_gammaherpesvirus_1__2054179
Identity
- Accession:
- YP_009551831 ↗
- Protein ID:
- thymidine_kinase
- Kingdom:
- euk
Quality
61.9
mean pLDDT
Taxonomy
Heunggongvirae›
Peploviricota›
Herviviricetes›
Herpesvirales›
Orthoherpesviridae›
Percavirus›
Rhinolophus_gammaherpesvirus_1
TaxID: 2054179
Cluster
View cluster (22 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 298-329_441-617
Domain cluster:
rep: thymidine_kinase__YP_004207857__Cricetid_gammaherpesvirus_2__1605972__D258-282_414-556
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF08465.16 best | Herpes_TK_C | 58.3 | 6.50e-16 | 15.8% | 100.0% |
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1p72A00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.77 | 74.0 | 6.24e-01 | 100.0% | 97.2% |
| 1osnC00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.77 | 74.0 | 6.29e-01 | 100.0% | 99.0% |
| 1e2jA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.76 | 73.0 | 6.28e-01 | 100.0% | 97.7% |
| 2qorA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.67 | 41.0 | 5.15e-01 | 91.9% | 98.5% |
| 4cvnA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.58 | 43.0 | 4.68e-01 | 90.9% | 88.3% |
| 1p5zB00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.56 | 49.0 | 4.78e-01 | 91.4% | 99.6% |
| 1rkbA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.53 | 42.0 | 4.61e-01 | 92.3% | 97.7% |
| 2jaqA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.52 | 45.0 | 4.76e-01 | 90.4% | 100.0% |
| 1khtB00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.51 | 43.0 | 4.53e-01 | 88.5% | 99.5% |
ECOD (13)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 9545 | 2004.1.1.52 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Herpes_TK | 0.77 | 74.0 | 6.19e-01 | 100.0% | 97.3% |
| 9546 | 2004.1.1.52 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Herpes_TK | 0.77 | 74.0 | 6.20e-01 | 100.0% | 98.8% |
| 3314216 | 2004.1.1.70 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › dNK | 0.57 | 51.0 | 4.55e-01 | 92.8% | 95.4% |
| 4199769 | 101.1.2.88 ↗ | alpha arrays › HTH › HTH › winged helix domain › Dimerisation | 0.57 | 40.0 | 4.02e-01 | 71.8% | 80.5% |
| 4130856 | 2004.1.1.60 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SKI | 0.55 | 44.0 | 4.57e-01 | 91.4% | 87.0% |
| 3753842 | 2004.1.1.70 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › dNK | 0.54 | 48.0 | 4.67e-01 | 91.9% | 93.8% |
| 3273940 | 2004.1.1.70 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › dNK | 0.54 | 47.0 | 4.73e-01 | 90.4% | 95.2% |
| 4032154 | 2004.1.1.70 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › dNK | 0.53 | 47.0 | 4.82e-01 | 91.4% | 99.0% |
| 4402621 | 2004.1.1.79 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Thymidylate_kin | 0.53 | 45.0 | 4.73e-01 | 88.5% | 100.0% |
| 3884327 | 192.15.1.0 ↗ | alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains | 0.52 | 20.0 | 3.00e-01 | 76.6% | 81.1% |
| 4938237 | 2004.1.1.191 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_17 | 0.51 | 43.0 | 4.58e-01 | 87.1% | 100.0% |
| 3256146 | 2004.1.1.70 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › dNK | 0.51 | 47.0 | 4.40e-01 | 95.7% | 91.4% |
| 5070991 | 101.1.6.0 ↗ | alpha arrays › HTH › HTH › TrpR | 0.51 | 17.0 | 2.98e-01 | 77.0% | 91.4% |
D2
medium
residues 330-440
Domain cluster:
rep: ORF21__YP_010084385__Retroperitoneal_fibromatosis-associated_herpesvirus__111469__D274-329_354-381
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00693.25 best | Herpes_TK | 41.4 | 1.50e-10 | 99.1% | 40.0% |