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thymidine_kinase

Euk-Vir

Wood_mouse_herpesvirus

thymidine_kinase__YP_010085896__Wood_mouse_herpesvirus__432370

Identity

Accession:: YP_010085896 ↗
Protein ID:: thymidine_kinase
Kingdom:: euk

Quality

60.4 mean pLDDT

Taxonomy

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Rhadinovirus› Wood_mouse_herpesvirus

TaxID: 432370

Cluster

View cluster (22 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 327-523_596-642

PDB

Domain cluster: rep: thymidine_kinase__YP_009230154__Leporid_alphaherpesvirus_4__481315__D1-149_256-295

Pfam (3)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01712.26 best	dNK	40.2	4.60e-10	78.3%	77.8%
PF00693.25	Herpes_TK	69.6	3.80e-19	77.0%	67.1%
PF08465.16	Herpes_TK_C	43.7	2.50e-11	13.5%	93.9%

D2 medium residues 524-595

PDB

Domain cluster: representative

CATH (7)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2qvwA04	1.10.1520.10	Mainly Alpha › Orthogonal Bundle › Ribonuclease iii, N-terminal Endonuclease Domain; Chain A › Ribonuclease III domain	0.58	42.0	3.39e-01	77.8%	61.4%
2b3wA00	1.10.357.40	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › YbiA-like	0.55	43.0	3.30e-01	100.0%	36.3%
1p4wA00	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.55	41.0	3.89e-01	84.7%	67.8%
3hhcC00	1.20.1250.60	Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › Interferon lambda	0.54	41.0	3.27e-01	81.9%	74.2%
2j0wA02	1.20.120.1320	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Aspartokinase, catalytic domain	0.54	46.0	4.34e-01	100.0%	88.2%
3gruA02	1.10.8.100	Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › rRNA adenine dimethylase, C-terminal domain	0.54	45.0	4.36e-01	98.6%	86.0%
2q0yA01	3.40.630.30	Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT)	0.52	40.0	3.26e-01	83.3%	47.1%

ECOD (13)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3929697	101.1.1.3 ↗	alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-binding	0.65	45.0	4.06e-01	73.6%	51.4%
3812411	101.1.1.69 ↗	alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_7	0.65	46.0	4.26e-01	76.4%	63.2%
3289678	101.1.1.58 ↗	alpha arrays › HTH › HTH › Three-helical HTH › HTH_18	0.64	46.0	4.90e-01	76.4%	98.3%
3395545	101.1.1.69 ↗	alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_7	0.63	45.0	4.08e-01	76.4%	56.0%
4961280	101.1.2.939 ↗	alpha arrays › HTH › HTH › winged helix domain › PF26270	0.60	48.0	4.95e-01	100.0%	98.5%
4458965	101.1.1.63 ↗	alpha arrays › HTH › HTH › Three-helical HTH › HTH_28	0.60	41.0	4.03e-01	72.2%	82.5%
3687110	101.1.1.36 ↗	alpha arrays › HTH › HTH › Three-helical HTH › Homeobox_KN	0.60	42.0	4.08e-01	73.6%	75.0%
3964894	101.1.1.58 ↗	alpha arrays › HTH › HTH › Three-helical HTH › HTH_18	0.60	42.0	3.83e-01	75.0%	73.0%
4936844	101.1.1.0 ↗	alpha arrays › HTH › HTH › Three-helical HTH	0.59	46.0	4.60e-01	88.9%	94.7%
3960027	101.1.1.535 ↗	alpha arrays › HTH › HTH › Three-helical HTH › LCM	0.57	41.0	3.98e-01	76.4%	93.8%
4241531	101.1.3.1 ↗	alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE	0.56	41.0	4.22e-01	88.9%	84.3%
4057034	181.1.1.0 ↗	alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins	0.53	41.0	4.06e-01	86.1%	81.3%
3938616	101.1.1.1 ↗	alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain	0.51	41.0	3.88e-01	94.4%	74.7%