←Back to structures

topoisomerase_2

Euk-Vir

Ostreococcus_lucimarinus_virus_OlV5

topoisomerase_2__YP_007674675__Ostreococcus_lucimarinus_virus_OlV5__754064

Identity

Accession:: YP_007674675 ↗
Protein ID:: topoisomerase_2
Kingdom:: euk

Quality

89.5 mean pLDDT

Taxonomy

Bamfordvirae› Nucleocytoviricota› Megaviricetes› Algavirales› Phycodnaviridae› Prasinovirus› Ostreococcus_lucimarinus_virus_OlV5

TaxID: 754064

Cluster

View cluster (39 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 52-238

PDB

Domain cluster: rep: IMGVR_UViG_3300039190_000305-3300039190-Ga0399989_003201_3_1937__D82-97_167-336

D2 high residues 244-385

PDB

Domain cluster: rep: DNA_gyrase_subunit_B__YP_009352802__Kaumoebavirus_Viruses.__X__D311-415

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00204.32 best	DNA_gyraseB	52.9	4.40e-14	96.5%	55.2%

D3 high residues 959-1071

PDB

Domain cluster: rep: MH494197.1__AXC39168.1__X__00456__D116-252

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00521.27 best	DNA_topoisoIV	32.8	5.20e-08	99.1%	26.5%

D4 medium residues 390-542_577-602

PDB

Domain cluster: rep: DNA_topoisomerase_2__YP_009162467__Salmon_gill_poxvirus__1680908__D385-517_553-621_640-664

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01751.29 best	Toprim	31.5	2.20e-07	65.9%	84.4%

D5 medium residues 603-667

PDB

Domain cluster: rep: DNA_topoisomerase_II__YP_009238657__Brazilian_marseillevirus__1813599__D609-672

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF16898.11 best	TOPRIM_C	39.6	8.10e-10	90.8%	40.6%

CATH (6)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3zgkA00	1.10.10.2460	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A ›	0.60	44.0	4.30e-01	92.3%	72.2%
2wv2A00	1.10.630.10	Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450	0.59	49.0	3.01e-01	95.4%	40.4%
4cq4B00	6.10.340.10	Special › Helix non-globular › hypothetical protein mp506/mpn330, domain 1 ›	0.54	40.0	3.45e-01	100.0%	50.0%
1eniA00	1.10.440.10	Mainly Alpha › Orthogonal Bundle › Endonuclease V › T4 endonuclease V	0.53	43.0	3.56e-01	96.9%	67.9%
3ceiA01	1.10.287.990	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Fe,Mn superoxide dismutase (SOD) domain	0.52	39.0	3.96e-01	81.5%	90.5%
4mndA02	1.20.120.1760	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CDP-alcohol phosphotransferase transmembrane (TM) domain	0.51	40.0	2.97e-01	89.2%	38.2%

ECOD (10)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3789608	2006.1.3.0 ↗	a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain	0.89	81.0	5.14e-01	100.0%	22.9%
3971654	1075.3.1.0 ↗	alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC importer transmembrane domain fold › Type I ABC importer transmembrane domain fold	0.60	44.0	2.98e-01	80.0%	95.6%
3708680	2498.1.1.0 ↗	mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain"	0.59	50.0	3.63e-01	98.5%	69.5%
3170794	101.1.1.0 ↗	alpha arrays › HTH › HTH › Three-helical HTH	0.57	46.0	4.19e-01	90.8%	88.9%
3507297	109.4.1.839 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Maestro_HEAT	0.56	47.0	3.05e-01	96.9%	20.8%
4603635	109.4.1.356 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fungal_trans	0.53	43.0	2.72e-01	100.0%	34.7%
3797507	2498.1.1.0 ↗	mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain"	0.53	44.0	3.04e-01	100.0%	68.3%
3667494	2003.1.1.0 ↗	a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains	0.52	36.0	2.43e-01	75.4%	18.6%
3806665	109.4.1.1495 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF26522	0.51	43.0	2.79e-01	100.0%	56.3%
3232086	101.1.1.0 ↗	alpha arrays › HTH › HTH › Three-helical HTH	0.50	39.0	3.54e-01	87.7%	67.4%

D6 medium residues 668-797

PDB

Domain cluster: rep: DNA_topoisomerase_2__YP_009162467__Salmon_gill_poxvirus__1680908__D669-796

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00521.27 best	DNA_topoisoIV	164.3	6.30e-48	100.0%	29.9%

D7 medium residues 848-930

PDB

Domain cluster: rep: IMGVR_UViG_3300007985_000017-3300007985-Ga0100381_100027569__D212-299