transactivating_tegument_protein_VP16

Euk-Vir

Bovine_alphaherpesvirus_1

transactivating_tegument_protein_VP16__NP_045311__Bovine_alphaherpesvirus_1__10320

Identity

70.1 mean pLDDT

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Varicellovirus› bovine_alphaherpesvirus_1

TaxID: 10320

View cluster (32 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-52

PDB

D2 medium residues 53-74_194-231

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02232.20 best	Alpha_TIF	39.1	7.30e-10	63.3%	10.5%

CATH (1)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3a8tA02	1.10.287.890	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Crystal structure of tRNA isopentenylpyrophosphate transferase (bh2366) domain	0.78	69.0	5.60e-01	98.3%	94.6%

ECOD (1)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3577011	193.1.1.0 ↗	alpha bundles › CH domain-like › Calponin-homology domain-like › Calponin-homology domain-like	0.63	49.0	3.94e-01	86.7%	85.6%

D3 medium residues 75-193_308-334_348-364

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02232.20 best	Alpha_TIF	91.9	6.40e-26	71.8%	29.4%

CATH (3)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
16vpA00	1.10.1290.10	Mainly Alpha › Orthogonal Bundle › Conserved core of transcriptional regulatory protein vp16 › Alpha trans-inducing (Alpha-TIF)	0.93	80.0	6.19e-01	87.7%	83.6%
8a1gC01	1.20.1270.60	Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain	0.57	42.0	4.05e-01	76.1%	83.4%
8iprA01	1.20.1560.10	Mainly Alpha › Up-down Bundle › ABC transporter transmembrane region fold › ABC transporter type 1, transmembrane domain	0.53	39.0	3.17e-01	76.1%	72.7%

ECOD (2)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
7584	816.1.1.1 ↗	a+b complex topology › Conserved core of transcriptional regulatory protein vp16 › Conserved core of transcriptional regulatory protein vp16 › Conserved core of transcriptional regulatory protein vp16 › Alpha_TIF	0.93	80.0	6.24e-01	87.7%	85.8%
3247945	4323.1.1.1 ↗	alpha bundles › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C › V_ATPase_I	0.55	44.0	3.48e-01	85.3%	87.0%

D4 medium residues 232-307_365-385

PDB

Domain cluster: rep: transactivating_tegument_protein_VP16__YP_009137200__Human_alphaherpesvirus_2__10310__D69-91_250-335

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02232.20 best	Alpha_TIF	95.8	4.20e-27	84.5%	22.4%