←Back to structures

transactivating_tegument_protein_VP16

Euk-Vir

Columbid_alphaherpesvirus_1

transactivating_tegument_protein_VP16__YP_009352958__Columbid_alphaherpesvirus_1__93386

Identity

Accession:: YP_009352958 ↗
Protein ID:: transactivating_tegument_protein_VP16
Kingdom:: euk

Quality

71.0 mean pLDDT

Taxonomy

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Mardivirus› Columbid_alphaherpesvirus_1

TaxID: 93386

Cluster

View cluster (32 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 304-348

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02232.20 best	Alpha_TIF	50.8	2.00e-13	100.0%	13.1%

CATH (10)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
16vpA00	1.10.1290.10	Mainly Alpha › Orthogonal Bundle › Conserved core of transcriptional regulatory protein vp16 › Alpha trans-inducing (Alpha-TIF)	0.90	82.0	4.83e-01	100.0%	14.5%
1zklA00	1.10.1300.10	Mainly Alpha › Orthogonal Bundle › Catalytic domain of cyclic nucleotide phosphodiesterase 4b2b › 3'5'-cyclic nucleotide phosphodiesterase, catalytic domain	0.67	49.0	2.93e-01	77.8%	63.1%
3b34A05	1.25.50.10	Mainly Alpha › Alpha Horseshoe › Zincin-like fold › Peptidase M1, alanyl aminopeptidase, C-terminal domain	0.63	52.0	3.13e-01	93.3%	25.8%
3asaA02	3.40.640.10	Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain)	0.61	50.0	3.22e-01	93.3%	22.4%
1eq2D02	3.90.25.10	Alpha Beta › Alpha-Beta Complex › UDP-galactose 4-epimerase; domain 1 › UDP-galactose 4-epimerase, domain 1	0.60	44.0	3.48e-01	80.0%	87.1%
2vqeC02	3.30.1140.32	Alpha Beta › 2-Layer Sandwich › Ribosomal protein S3 C-terminal domain › Ribosomal protein S3, C-terminal domain	0.60	48.0	3.76e-01	91.1%	81.0%
6vg5A00	1.10.10.930	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A ›	0.59	51.0	4.22e-01	97.8%	65.4%
4axsA00	3.40.1160.10	Alpha Beta › 3-Layer(aba) Sandwich › Carbamate kinase › Acetylglutamate kinase-like	0.59	47.0	2.99e-01	97.8%	31.6%
3dydA02	3.40.640.10	Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain)	0.58	45.0	2.93e-01	91.1%	41.4%
1jyaB00	3.30.1460.10	Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, ›	0.58	39.0	2.94e-01	73.3%	27.3%

ECOD (12)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
7584	816.1.1.1 ↗	a+b complex topology › Conserved core of transcriptional regulatory protein vp16 › Conserved core of transcriptional regulatory protein vp16 › Conserved core of transcriptional regulatory protein vp16 › Alpha_TIF	0.90	82.0	4.85e-01	100.0%	14.9%
3374313	109.4.1.883 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2	0.73	58.0	3.44e-01	91.1%	12.8%
4433527	109.4.1.3336 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_1, TPR_2, ANAPC3, CHIP_TPR_N	0.71	56.0	3.66e-01	88.9%	22.9%
5049016	7515.1.1.0 ↗	a/b three-layered sandwiches › Alkaline phosphatase-like › Alkaline phosphatase-like › Alkaline phosphatase-like	0.70	57.0	3.41e-01	93.3%	20.9%
3971440	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.66	51.0	2.98e-01	86.7%	34.9%
3541625	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.62	49.0	3.47e-01	93.3%	30.8%
3414248	397.3.1.2 ↗	few secondary structure elements › Toxic hairpin › Pollen allergen ole e 6 › Pollen allergen ole e 6 › Per1	0.62	50.0	4.51e-01	88.9%	98.3%
3534090	1145.1.1.1 ↗	few secondary structure elements › nigellin-1.1 › nigellin-1.1 › nigellin-1.1 › Per1	0.61	49.0	4.08e-01	88.9%	97.5%
4949997	3740.1.1.4 ↗	alpha arrays › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › FrhB_FdhB_C	0.59	52.0	3.08e-01	100.0%	49.2%
3957426	7515.1.1.2 ↗	a/b three-layered sandwiches › Alkaline phosphatase-like › Alkaline phosphatase-like › Alkaline phosphatase-like › Sulfatase	0.56	47.0	2.82e-01	95.6%	47.1%
3592412	376.1.1.0 ↗	few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box	0.54	47.0	3.18e-01	97.8%	63.9%
3965865	6056.1.1.2 ↗	alpha arrays › SP1917-like › SP1917-like › SP1917-like › PrmC_N	0.52	42.0	3.28e-01	84.4%	53.7%

D2 medium residues 170-295

PDB

Domain cluster: rep: transactivating_tegument_protein_VP16__YP_009176885__Testudinid_alphaherpesvirus_3__2560801__D132-171_186-238_328-350

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02232.20 best	Alpha_TIF	150.1	1.20e-43	100.0%	36.4%