transactivating_tegument_protein_VP16

Euk-Vir

Cervid_alphaherpesvirus_3

transactivating_tegument_protein_VP16__YP_010087559__Cervid_alphaherpesvirus_3__2115790

Identity

73.4 mean pLDDT

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Varicellovirus› Cervid_alphaherpesvirus_3

TaxID: 2115790

View cluster (32 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 36-67_91-235

PDB

Domain cluster: rep: transactivating_tegument_protein_VP16__YP_002333493__Equid_alphaherpesvirus_9__55744__D57-147_162-249_335-395

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02232.20 best	Alpha_TIF	121.4	6.60e-35	83.6%	42.9%

D2 medium residues 68-90_303-343

PDB

Domain cluster: representative

CATH (2)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1e91A00	1.20.1160.11	Mainly Alpha › Up-down Bundle › Paired amphipathic helix 2 (pah2 repeat) › Paired amphipathic helix	0.62	29.0	2.69e-01	89.1%	31.8%
4jndA01	1.10.1740.220	Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A ›	0.51	44.0	3.46e-01	95.3%	68.5%

ECOD (2)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3960955	2011.2.1.7 ↗	a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like › PAC2	0.53	40.0	2.54e-01	81.2%	54.6%
4025109	130.1.1.6 ↗	alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › PRP4	0.51	37.0	3.60e-01	84.4%	68.6%

D3 medium residues 236-302_344-385

PDB

Domain cluster: rep: transactivating_tegument_protein_VP16__YP_009137200__Human_alphaherpesvirus_2__10310__D69-91_250-335

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02232.20 best	Alpha_TIF	80.5	1.80e-22	67.0%	19.5%