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transcription_regulator_P47

Euk-Vir

Spodoptera_littoralis_nucleopolyhedrovirus

transcription_regulator_P47__YP_009505841__Spodoptera_littoralis_nucleopolyhedrovirus__10456

Identity

Accession:: YP_009505841 ↗
Protein ID:: transcription_regulator_P47
Kingdom:: euk

Quality

71.0 mean pLDDT

Taxonomy

Naldaviricetes› Lefavirales› Baculoviridae› Alphabaculovirus› Spodoptera_littoralis_nucleopolyhedrovirus

TaxID: 10456

Cluster

View cluster (44 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 3-68

PDB

Domain cluster: rep: transcription_regulator__YP_009316134__Anticarsia_gemmatalis_multiple_nucleopolyhedrovirus__268591__D3-67

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF05112.18 best	Baculo_p47	34.8	2.20e-08	93.9%	18.6%

D2 medium residues 79-153

PDB

Domain cluster: rep: p47__YP_009505996__Clostera_anastomosis_granulovirus_B__1986290__D104-164

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF05112.18 best	Baculo_p47	98.7	7.40e-28	100.0%	24.2%

D3 medium residues 208-229_302-365

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF05112.18 best	Baculo_p47	51.4	1.90e-13	45.4%	12.1%

CATH (12)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3pm0A00	1.10.630.10	Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450	0.62	47.0	3.02e-01	83.7%	40.5%
3hzsA00	1.10.3810.10	Mainly Alpha › Orthogonal Bundle › Penicillin binding protein transpeptidase fold › Biosynthetic peptidoglycan transglycosylase-like	0.56	43.0	3.32e-01	83.7%	54.1%
4akgA04	1.20.58.1120	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Dynein motor heavy chain, linker domain, subdomain 4	0.54	47.0	3.86e-01	95.3%	81.4%
3l9vC00	3.40.30.10	Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin	0.54	41.0	3.31e-01	82.6%	79.6%
4nqfA00	1.20.120.330	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2	0.53	42.0	3.55e-01	84.9%	88.3%
3vayA02	1.20.120.1600	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) ›	0.52	37.0	3.75e-01	75.6%	80.5%
1vq8V00	1.10.287.310	Mainly Alpha › Orthogonal Bundle › Helix Hairpins ›	0.51	35.0	3.94e-01	72.1%	98.5%
4lunU00	1.25.40.180	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat ›	0.50	42.0	2.88e-01	91.9%	60.1%
7kypE01	3.40.50.300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases	0.50	43.0	3.29e-01	98.8%	69.6%
1qdbA02	1.20.140.10	Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3	0.50	35.0	2.94e-01	74.4%	43.4%
6p73A02	1.20.140.10	Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3	0.50	35.0	2.97e-01	74.4%	44.1%
1s5jA04	1.10.287.690	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › B family DNA polymerase, finger domain	0.50	30.0	3.60e-01	70.9%	86.9%

ECOD (5)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4928642	1075.1.2.0 ↗	alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › MacB transmembrane domain	0.55	42.0	3.67e-01	83.7%	72.9%
3475253	189.1.1.2 ↗	alpha bundles › GTPase activation domain, GAP › GTPase activation domain, GAP › GTPase activation domain, GAP › RhoGAP	0.54	45.0	3.59e-01	97.7%	73.0%
5081763	7516.1.1.2 ↗	a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2	0.53	45.0	3.12e-01	94.2%	97.3%
3447961	650.1.1.0 ↗	alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain	0.51	38.0	3.70e-01	80.2%	80.0%
3854699	3860.1.1.285 ↗	alpha bundles › Myosin VI lever arm › Myosin VI lever arm › Myosin VI lever arm › Casc1_N	0.51	40.0	3.82e-01	84.9%	81.9%

D4 medium residues 230-301

PDB

Domain cluster: rep: p47__YP_009552157__Malacosoma_neustria_nucleopolyhedrovirus__38012__D221-277

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF05112.18 best	Baculo_p47	79.6	4.90e-22	100.0%	23.5%

D5 medium residues 366-395

PDB