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transcription_regulator
Euk-VirNeodiprion_abietis_NPV
transcription_regulator__YP_667897__Neodiprion_abietis_NPV__204507
Identity
- Accession:
- YP_667897 ↗
- Protein ID:
- transcription_regulator
- Kingdom:
- euk
Quality
68.1
mean pLDDT
Taxonomy
Naldaviricetes›
Lefavirales›
Baculoviridae›
Gammabaculovirus›
Neodiprion_abietis_nucleopolyhedrovirus
TaxID: 204507
Cluster
View cluster (2 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 187-325
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF05112.18 best | Baculo_p47 | 87.1 | 2.60e-24 | 89.9% | 41.2% |
CATH (14)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1earA02 | 3.30.70.790 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › UreE, C-terminal domain | 0.73 | 34.0 | 4.64e-01 | 74.1% | 88.4% |
| 3tj8A02 | 3.30.70.790 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › UreE, C-terminal domain | 0.72 | 35.0 | 4.62e-01 | 77.0% | 86.5% |
| 1whvA00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.66 | 41.0 | 4.77e-01 | 87.8% | 87.0% |
| 3im8A02 | 3.30.70.250 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Malonyl-CoA ACP transacylase, ACP-binding | 0.65 | 35.0 | 4.66e-01 | 76.3% | 98.6% |
| 3m6uA01 | 3.30.70.1170 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Sun protein; domain 3 | 0.62 | 37.0 | 4.57e-01 | 75.5% | 95.3% |
| 2m88A01 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.60 | 38.0 | 4.59e-01 | 97.8% | 100.0% |
| 3lduA01 | 3.30.2130.30 | Alpha Beta › 2-Layer Sandwich › VC0802-like › | 0.59 | 47.0 | 4.35e-01 | 84.9% | 69.4% |
| 2hiyA01 | 3.30.70.1280 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › SP0830-like domains | 0.58 | 37.0 | 4.44e-01 | 78.4% | 100.0% |
| 1y10B02 | 3.30.70.1230 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain | 0.57 | 49.0 | 4.52e-01 | 94.2% | 96.2% |
| 2if1A00 | 3.30.780.10 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor Eif1 › SUI1-like domain | 0.57 | 33.0 | 3.47e-01 | 72.7% | 61.9% |
| 2kloA00 | 1.10.10.1420 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › DNA replication factor Cdt1, C-terminal WH domain | 0.55 | 27.0 | 2.78e-01 | 94.2% | 44.2% |
| 7veeA02 | 3.40.366.10 | Alpha Beta › 3-Layer(aba) Sandwich › Malonyl-Coenzyme A Acyl Carrier Protein; domain 2 › Malonyl-Coenzyme A Acyl Carrier Protein, domain 2 | 0.52 | 42.0 | 3.27e-01 | 87.8% | 91.6% |
| 2hg4D03 | 3.40.366.10 | Alpha Beta › 3-Layer(aba) Sandwich › Malonyl-Coenzyme A Acyl Carrier Protein; domain 2 › Malonyl-Coenzyme A Acyl Carrier Protein, domain 2 | 0.51 | 42.0 | 3.28e-01 | 88.5% | 80.1% |
| 1ybtB00 | 3.30.70.1230 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain | 0.51 | 46.0 | 4.32e-01 | 98.6% | 92.4% |
ECOD (13)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3948353 | 304.56.1.5 ↗ | a+b two layers › Alpha-beta plaits › CRISPR associated protein Cas2-like › CRISPR associated protein Cas2-like › PaaX_M | 0.63 | 34.0 | 4.45e-01 | 78.4% | 97.3% |
| 3286231 | 304.11.1.1 ↗ | a+b two layers › Alpha-beta plaits › Probable ACP-binding domain of malonyl-CoA ACP transacylase › Probable ACP-binding domain of malonyl-CoA ACP transacylase › Acyl_transf_1 | 0.63 | 34.0 | 4.48e-01 | 74.1% | 98.7% |
| 4263279 | 304.11.1.0 ↗ | a+b two layers › Alpha-beta plaits › Probable ACP-binding domain of malonyl-CoA ACP transacylase › Probable ACP-binding domain of malonyl-CoA ACP transacylase | 0.63 | 35.0 | 4.32e-01 | 76.3% | 88.2% |
| 4322599 | 304.7.1.26 ↗ | a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors › YqfD | 0.62 | 34.0 | 4.54e-01 | 84.9% | 100.0% |
| 3700944 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.60 | 36.0 | 4.45e-01 | 73.4% | 97.6% |
| 134075 | 304.9.1.15 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RNA_bind | 0.59 | 37.0 | 4.27e-01 | 76.3% | 86.3% |
| 3408005 | 2004.1.1.5 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran | 0.58 | 46.0 | 3.01e-01 | 84.2% | 63.4% |
| 4217703 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.58 | 39.0 | 4.55e-01 | 84.9% | 100.0% |
| 2698983 | 304.11.1.1 ↗ | a+b two layers › Alpha-beta plaits › Probable ACP-binding domain of malonyl-CoA ACP transacylase › Probable ACP-binding domain of malonyl-CoA ACP transacylase › Acyl_transf_1 | 0.57 | 34.0 | 4.20e-01 | 70.5% | 100.0% |
| 4954773 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.57 | 41.0 | 4.49e-01 | 95.7% | 90.4% |
| 2985023 | 304.11.1.0 ↗ | a+b two layers › Alpha-beta plaits › Probable ACP-binding domain of malonyl-CoA ACP transacylase › Probable ACP-binding domain of malonyl-CoA ACP transacylase | 0.56 | 33.0 | 4.02e-01 | 71.9% | 96.3% |
| 3587788 | 304.128.1.0 ↗ | a+b two layers › Alpha-beta plaits › ferredoxin-like domain in periplasmic region of MacB › ferredoxin-like domain in periplasmic region of MacB | 0.51 | 39.0 | 4.25e-01 | 85.6% | 96.5% |
| 3257902 | 304.11.1.0 ↗ | a+b two layers › Alpha-beta plaits › Probable ACP-binding domain of malonyl-CoA ACP transacylase › Probable ACP-binding domain of malonyl-CoA ACP transacylase | 0.50 | 32.0 | 3.87e-01 | 79.1% | 98.9% |
D2
medium
residues 44-99
Domain cluster:
representative
CATH (15)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3d2lA02 | 2.20.25.110 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases | 0.68 | 40.0 | 3.92e-01 | 76.8% | 52.4% |
| 3pgbA01 | 2.70.98.20 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Copper amine oxidase, catalytic domain | 0.65 | 47.0 | 2.72e-01 | 76.8% | 63.9% |
| 2d42A02 | 3.10.450.380 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.64 | 40.0 | 3.81e-01 | 96.4% | 53.8% |
| 3gd6A01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.63 | 38.0 | 2.86e-01 | 82.1% | 23.2% |
| 3es1A01 | 2.20.70.150 | Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › | 0.62 | 36.0 | 4.12e-01 | 73.2% | 81.1% |
| 2bw2A01 | 3.10.20.420 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Bypass-of-forespore C, N-terminal domain | 0.62 | 36.0 | 3.72e-01 | 96.4% | 58.2% |
| 5ib9A01 | 3.40.630.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases | 0.56 | 40.0 | 2.56e-01 | 76.8% | 31.2% |
| 1kf6A04 | 4.10.80.40 | Few Secondary Structures › Irregular › Rhinovirus 14, subunit 4 › succinate dehydrogenase protein domain | 0.56 | 35.0 | 4.06e-01 | 85.7% | 100.0% |
| 2py5A05 | 4.10.80.20 | Few Secondary Structures › Irregular › Rhinovirus 14, subunit 4 › DNA polymerase; domain 5 | 0.56 | 31.0 | 3.53e-01 | 85.7% | 93.3% |
| 6tdxG01 | 3.40.1380.10 | Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate Kinase; Chain: A, domain 1 › ATP synthase, F1 complex, gamma subunit | 0.55 | 41.0 | 2.83e-01 | 82.1% | 35.5% |
| 3gw6A03 | 3.30.2460.10 | Alpha Beta › 2-Layer Sandwich › Endo-n-acetylneuraminidase fold › Endo-n-acetylneuraminidase domain | 0.52 | 31.0 | 3.12e-01 | 98.2% | 54.4% |
| 5odnC00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.52 | 38.0 | 3.17e-01 | 91.1% | 44.1% |
| 1se8A02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.52 | 41.0 | 3.38e-01 | 91.1% | 77.5% |
| 4hvtA01 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.51 | 36.0 | 2.35e-01 | 78.6% | 53.3% |
| 1p1hB01 | 3.30.2360.10 | Alpha Beta › 2-Layer Sandwich › Glyceraldehyde-3-phosphate dehydrogenase-like fold › Glyceraldehyde-3-phosphate dehydrogenase-like domain | 0.51 | 40.0 | 2.90e-01 | 91.1% | 78.4% |
ECOD (24)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4983447 | 3457.1.1.3 ↗ | alpha bundles › GxGD membrane protease › GxGD membrane protease › GxGD membrane protease › Arc_PepC_II | 0.63 | 38.0 | 2.49e-01 | 92.9% | 12.5% |
| 3395022 | 394.1.1.1 ↗ | few secondary structure elements › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › CBM_14 | 0.61 | 48.0 | 4.36e-01 | 94.6% | 64.4% |
| None | — | 0.60 | 45.0 | 2.86e-01 | 98.2% | 15.2% | |
| 4641382 | 4099.1.1.32 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › PF30019 | 0.59 | 35.0 | 2.56e-01 | 82.1% | 20.0% |
| 3387236 | 2004.1.1.220 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SWI2_SNF2 | 0.57 | 46.0 | 3.22e-01 | 100.0% | 82.7% |
| 4137758 | 375.14.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) › Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) | 0.56 | 34.0 | 3.56e-01 | 75.0% | 64.0% |
| 5056444 | 2002.1.1.29 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › DHDPS | 0.55 | 41.0 | 2.63e-01 | 85.7% | 64.3% |
| 3213645 | 267.1.1.0 ↗ | a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain | 0.54 | 45.0 | 3.00e-01 | 96.4% | 48.4% |
| 3355880 | 2004.1.1.250 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin,Microtub_bd | 0.54 | 41.0 | 2.63e-01 | 89.3% | 48.6% |
| 3924339 | 109.2.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid | 0.54 | 44.0 | 2.47e-01 | 94.6% | 52.3% |
| 3194238 | 2006.1.4.10 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN_4 | 0.54 | 45.0 | 3.06e-01 | 100.0% | 81.2% |
| 3479321 | 5001.1.1.41 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srw | 0.53 | 39.0 | 2.49e-01 | 87.5% | 70.6% |
| 3239560 | 209.1.1.14 ↗ | a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like › PF29411 | 0.53 | 41.0 | 2.88e-01 | 89.3% | 74.4% |
| 5046521 | 3326.1.1.1 ↗ | alpha arrays › DNA-binding domain in UvrA › DNA-binding domain in UvrA › DNA-binding domain in UvrA › UvrA_DNA-bind | 0.52 | 41.0 | 3.34e-01 | 91.1% | 98.3% |
| 3517620 | 5001.1.1.1 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 | 0.52 | 40.0 | 2.61e-01 | 89.3% | 32.5% |
| 3163963 | 3326.1.1.1 ↗ | alpha arrays › DNA-binding domain in UvrA › DNA-binding domain in UvrA › DNA-binding domain in UvrA › UvrA_DNA-bind | 0.52 | 39.0 | 3.22e-01 | 83.9% | 100.0% |
| None | — | 0.52 | 42.0 | 2.35e-01 | 92.9% | 54.2% | |
| 3601299 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.52 | 41.0 | 3.24e-01 | 91.1% | 60.8% |
| 5004912 | 3326.1.1.1 ↗ | alpha arrays › DNA-binding domain in UvrA › DNA-binding domain in UvrA › DNA-binding domain in UvrA › UvrA_DNA-bind | 0.51 | 39.0 | 3.19e-01 | 83.9% | 100.0% |
| 3500824 | 5001.1.1.1 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 | 0.51 | 40.0 | 2.60e-01 | 94.6% | 44.9% |
| 4160831 | 109.4.1.1255 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Adaptin_N, Cnd1 | 0.51 | 44.0 | 2.47e-01 | 96.4% | 28.1% |
| 4011470 | 206.1.1.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase | 0.51 | 42.0 | 2.66e-01 | 100.0% | 55.5% |
| None | — | 0.50 | 37.0 | 2.37e-01 | 82.1% | 88.0% | |
| 1758564 | 69.1.1.2 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Hom_end_hint | 0.50 | 37.0 | 2.80e-01 | 85.7% | 52.9% |
D3
medium
residues 100-171