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transcription_termination_factor
Euk-VirPhaeocystis_globosa_virus
transcription_termination_factor__YP_008052465__Phaeocystis_globosa_virus__251749
Identity
- Accession:
- YP_008052465 ↗
- Protein ID:
- transcription_termination_factor
- Kingdom:
- euk
Quality
82.0
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 1-48
Domain cluster:
representative
CATH (26)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1iurA01 | 1.10.287.110 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain | 0.73 | 57.0 | 5.31e-01 | 89.6% | 85.7% |
| 6orkA01 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.67 | 48.0 | 3.08e-01 | 79.2% | 17.1% |
| 1gxmB00 | 1.50.10.20 | Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › | 0.67 | 57.0 | 3.46e-01 | 100.0% | 19.3% |
| 3bvoB01 | 1.10.287.110 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain | 0.67 | 54.0 | 4.41e-01 | 95.8% | 63.3% |
| 6orcB00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.66 | 47.0 | 3.50e-01 | 79.2% | 30.6% |
| 6xz3A01 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.66 | 47.0 | 3.61e-01 | 79.2% | 61.5% |
| 2dsjA01 | 1.20.970.10 | Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C | 0.65 | 48.0 | 4.35e-01 | 81.2% | 65.7% |
| 6ok0B01 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.65 | 47.0 | 3.62e-01 | 79.2% | 34.5% |
| 4malA00 | 1.20.58.2200 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.64 | 47.0 | 4.52e-01 | 83.3% | 71.2% |
| 2ptfB02 | 1.20.58.290 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Hypothetical membrane protein ta0354_69_121. | 0.63 | 48.0 | 4.64e-01 | 87.5% | 87.7% |
| 1skvA00 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.61 | 41.0 | 3.86e-01 | 72.9% | 54.7% |
| 2blfB01 | 1.10.760.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome Bc1 Complex; Chain D, domain 2 › Cytochrome c-like domain | 0.60 | 51.0 | 4.75e-01 | 100.0% | 96.8% |
| 4a8eA01 | 1.10.150.130 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain | 0.57 | 47.0 | 4.02e-01 | 100.0% | 56.3% |
| 2jx4A01 | 6.10.140.460 | Special › Helix non-globular › Helix Hairpins › | 0.57 | 39.0 | 3.92e-01 | 72.9% | 79.2% |
| 2ic6A00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.56 | 38.0 | 3.49e-01 | 72.9% | 49.3% |
| 2imsA00 | 1.10.437.10 | Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like | 0.55 | 45.0 | 3.27e-01 | 100.0% | 56.4% |
| 6pw7A02 | 1.10.150.50 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Transcription Factor, Ets-1 | 0.54 | 45.0 | 4.08e-01 | 100.0% | 80.3% |
| 6qwvH02 | 1.10.150.50 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Transcription Factor, Ets-1 | 0.54 | 45.0 | 4.29e-01 | 97.9% | 91.4% |
| 1ej6B00 | 3.90.1830.10 | Alpha Beta › Alpha-Beta Complex › Inner capsid protein lambda-1 › Inner capsid protein lambda-1 | 0.54 | 44.0 | 2.40e-01 | 100.0% | 8.1% |
| 2zj2A03 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 37.0 | 3.23e-01 | 77.1% | 60.7% |
| 2pkeA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.53 | 42.0 | 3.71e-01 | 91.7% | 87.2% |
| 4guzA01 | 3.30.2140.10 | Alpha Beta › 2-Layer Sandwich › Arylamine N-acetyltransferase fold › Arylamine N-acetyltransferase | 0.53 | 44.0 | 3.08e-01 | 100.0% | 50.3% |
| 3busB00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.53 | 41.0 | 2.68e-01 | 89.6% | 24.8% |
| 3wd6A02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.52 | 42.0 | 3.33e-01 | 100.0% | 40.7% |
| 2dflA01 | 1.10.150.20 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain | 0.52 | 42.0 | 3.96e-01 | 93.8% | 85.0% |
| 2hszA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.51 | 42.0 | 3.63e-01 | 91.7% | 76.0% |
ECOD (21)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3591770 | 650.1.1.1 ↗ | alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ | 0.73 | 61.0 | 5.21e-01 | 100.0% | 68.2% |
| 4927979 | 192.4.1.0 ↗ | alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) | 0.67 | 55.0 | 5.16e-01 | 93.8% | 81.7% |
| 3699551 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.64 | 52.0 | 4.56e-01 | 97.9% | 97.5% |
| 4012875 | 109.8.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Arp2/3 complex 16 KDa subunit ARPC5 › Arp2/3 complex 16 KDa subunit ARPC5 | 0.62 | 48.0 | 3.95e-01 | 95.8% | 44.0% |
| 4928934 | 6049.1.1.0 ↗ | alpha bundles › PH0832-like › PH0832-like › PH0832-like | 0.62 | 49.0 | 3.75e-01 | 95.8% | 42.3% |
| 157374 | 107.1.1.0 ↗ | alpha arrays › Cytochrome c-like › Cytochrome c › Cytochrome c | 0.62 | 53.0 | 4.52e-01 | 100.0% | 76.5% |
| 5019623 | 102.1.1.27 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 | 0.56 | 49.0 | 4.47e-01 | 100.0% | 75.4% |
| 4033967 | 102.1.1.27 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 | 0.56 | 45.0 | 4.20e-01 | 97.9% | 84.6% |
| 3932442 | 102.5.1.0 ↗ | alpha arrays › HhH/H2TH › SAM-like subdomain in Sec63-like proteins › SAM-like subdomain in Sec63-like proteins | 0.55 | 43.0 | 3.85e-01 | 97.9% | 60.0% |
| 4958814 | 3457.1.1.3 ↗ | alpha bundles › GxGD membrane protease › GxGD membrane protease › GxGD membrane protease › Arc_PepC_II | 0.54 | 36.0 | 2.36e-01 | 72.9% | 37.3% |
| 5048452 | 102.1.1.27 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 | 0.53 | 44.0 | 3.85e-01 | 93.8% | 78.7% |
| 3085369 | 102.1.1.179 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_XRCC3_RpoA | 0.53 | 42.0 | 4.05e-01 | 100.0% | 79.0% |
| 3174667 | 102.5.1.0 ↗ | alpha arrays › HhH/H2TH › SAM-like subdomain in Sec63-like proteins › SAM-like subdomain in Sec63-like proteins | 0.53 | 42.0 | 3.98e-01 | 93.8% | 86.7% |
| 3781219 | 3985.1.1.0 ↗ | alpha bundles › CFEM domain (contains eight cysteines) › CFEM domain (contains eight cysteines) › CFEM domain (contains eight cysteines) | 0.53 | 40.0 | 3.01e-01 | 83.3% | 63.2% |
| 3783378 | 109.27.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › BACK domain › BACK domain | 0.53 | 40.0 | 3.81e-01 | 89.6% | 78.3% |
| 3325385 | 102.5.1.1 ↗ | alpha arrays › HhH/H2TH › SAM-like subdomain in Sec63-like proteins › SAM-like subdomain in Sec63-like proteins › HHH_5 | 0.53 | 42.0 | 4.02e-01 | 100.0% | 75.0% |
| 3889826 | 102.1.1.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like | 0.51 | 41.0 | 3.99e-01 | 100.0% | 81.8% |
| 4516320 | 3949.1.1.1 ↗ | alpha arrays › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain › IPPT | 0.51 | 37.0 | 3.25e-01 | 79.2% | 70.7% |
| 3846966 | 102.5.1.0 ↗ | alpha arrays › HhH/H2TH › SAM-like subdomain in Sec63-like proteins › SAM-like subdomain in Sec63-like proteins | 0.50 | 39.0 | 3.81e-01 | 97.9% | 88.3% |
| 3608219 | 102.5.1.1 ↗ | alpha arrays › HhH/H2TH › SAM-like subdomain in Sec63-like proteins › SAM-like subdomain in Sec63-like proteins › HHH_5 | 0.50 | 40.0 | 3.87e-01 | 91.7% | 90.9% |
| 3537970 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.50 | 40.0 | 3.85e-01 | 100.0% | 88.3% |
D2
medium
residues 250-355_847-865
Domain cluster:
representative
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5ocbA01 | 2.60.40.420 | Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins | 0.60 | 36.0 | 3.42e-01 | 96.0% | 48.1% |
| 3hgmA00 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.54 | 40.0 | 3.85e-01 | 96.8% | 66.0% |
| 2fgyA03 | 3.30.1330.140 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Carboxysome Shell Carbonic Anhydrase, C-terminal domain | 0.51 | 40.0 | 4.14e-01 | 96.0% | 88.9% |
| 3hbmA02 | 3.40.50.2000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; | 0.51 | 26.0 | 2.58e-01 | 95.2% | 42.6% |
| 3nraA02 | 3.40.640.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) | 0.51 | 34.0 | 2.80e-01 | 100.0% | 37.3% |
ECOD (7)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3649681 | 2005.1.1.0 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains | 0.58 | 34.0 | 3.32e-01 | 96.0% | 52.1% |
| 3263273 | 2005.1.1.3 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp | 0.56 | 41.0 | 3.94e-01 | 96.0% | 65.5% |
| 3994739 | 207.1.1.24 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_8 | 0.56 | 32.0 | 2.09e-01 | 99.2% | 12.7% |
| 4962803 | 7577.1.1.1 ↗ | a/b three-layered sandwiches › PLP-dependent transferases › PLP-dependent transferases › PLP-dependent transferases › Aminotran_1_2 | 0.55 | 32.0 | 2.46e-01 | 100.0% | 25.4% |
| 4962544 | 2005.1.1.3 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp | 0.54 | 40.0 | 3.81e-01 | 95.2% | 65.8% |
| 3651576 | 2005.1.1.3 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp | 0.53 | 38.0 | 4.04e-01 | 96.0% | 85.2% |
| 4963947 | 2005.1.1.3 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp | 0.50 | 37.0 | 3.49e-01 | 96.8% | 64.0% |
D3
medium
residues 620-699
Domain cluster:
representative
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1c0wA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.54 | 38.0 | 3.96e-01 | 96.2% | 83.6% |
| 1inpA02 | 3.30.540.10 | Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 | 0.51 | 37.0 | 2.91e-01 | 77.5% | 79.7% |
ECOD (4)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5050671 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.80 | 51.0 | 4.19e-01 | 98.8% | 37.8% |
| 5054855 | 2004.1.1.146 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATPase | 0.72 | 53.0 | 5.10e-01 | 100.0% | 68.9% |
| 3726868 | 7514.1.1.0 ↗ | a/b three-layered sandwiches › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain | 0.61 | 53.0 | 4.54e-01 | 100.0% | 63.7% |
| 3987015 | 101.1.2.6 ↗ | alpha arrays › HTH › HTH › winged helix domain › GntR | 0.54 | 41.0 | 4.25e-01 | 90.0% | 88.0% |
D4
medium
residues 895-1006
Domain cluster:
representative
CATH (50)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3fd9A03 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.85 | 53.0 | 6.47e-01 | 77.7% | 97.3% |
| 4lwsB00 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.85 | 55.0 | 6.18e-01 | 71.4% | 84.1% |
| 2gl2B00 | 1.10.287.1700 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.84 | 56.0 | 5.73e-01 | 90.2% | 69.7% |
| 3fppA03 | 6.10.140.1990 | Special › Helix non-globular › Helix Hairpins › | 0.82 | 58.0 | 6.50e-01 | 75.0% | 92.0% |
| 1qsdA00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.82 | 56.0 | 5.92e-01 | 75.0% | 77.5% |
| 1y1uA01 | 1.20.1050.20 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › STAT transcription factor, all-alpha domain | 0.81 | 70.0 | 5.68e-01 | 90.2% | 62.6% |
| 6h9xA01 | 1.10.287.40 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain | 0.81 | 51.0 | 5.39e-01 | 78.6% | 70.6% |
| 2v0xA01 | 1.10.287.3160 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.80 | 59.0 | 5.13e-01 | 87.5% | 51.8% |
| 4dylA02 | 1.10.287.160 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat | 0.78 | 56.0 | 6.13e-01 | 81.2% | 88.3% |
| 1ykeD00 | 6.10.280.10 | Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Mediator complex, subunit Med21 | 0.78 | 54.0 | 5.39e-01 | 80.4% | 69.0% |
| 4gzrB00 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.78 | 52.0 | 6.16e-01 | 70.5% | 100.0% |
| 3lssA01 | 1.10.287.40 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain | 0.78 | 51.0 | 5.18e-01 | 77.7% | 67.0% |
| 1skvA00 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.77 | 44.0 | 5.55e-01 | 70.5% | 96.9% |
| 4nqiD00 | 1.20.1270.60 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain | 0.76 | 58.0 | 4.45e-01 | 79.5% | 39.2% |
| 3syvA01 | 1.20.1270.60 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain | 0.75 | 56.0 | 4.30e-01 | 82.1% | 35.5% |
| 2ficB00 | 1.20.1270.60 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain | 0.75 | 66.0 | 5.38e-01 | 98.2% | 52.7% |
| 4lwsA00 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.75 | 60.0 | 6.30e-01 | 100.0% | 94.0% |
| 4iloA00 | 1.10.287.1490 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.75 | 61.0 | 4.75e-01 | 99.1% | 41.1% |
| 3r84A00 | 1.10.287.3490 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.75 | 51.0 | 5.93e-01 | 75.0% | 97.5% |
| 4mh6A00 | 1.10.287.1700 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.74 | 67.0 | 5.94e-01 | 97.3% | 89.3% |
| 2y39A00 | 1.20.120.1490 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.74 | 49.0 | 5.03e-01 | 71.4% | 69.1% |
| 1wleA01 | 1.10.287.40 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain | 0.74 | 52.0 | 5.26e-01 | 77.7% | 71.9% |
| 3t98B00 | 6.10.140.1350 | Special › Helix non-globular › Helix Hairpins › | 0.74 | 55.0 | 6.17e-01 | 79.5% | 100.0% |
| 1w9rA00 | 1.20.58.440 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › choline binding protein A | 0.73 | 49.0 | 4.82e-01 | 78.6% | 63.9% |
| 6r1nA01 | 1.10.287.40 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain | 0.73 | 49.0 | 5.08e-01 | 75.0% | 73.8% |
| 3na7A00 | 1.10.287.1490 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.73 | 63.0 | 4.92e-01 | 99.1% | 44.7% |
| 3ajwA00 | 1.10.287.1700 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.73 | 65.0 | 6.15e-01 | 98.2% | 83.6% |
| 4cqiA00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.72 | 51.0 | 5.19e-01 | 74.1% | 75.7% |
| 3vkgA12 | 1.10.287.2610 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.72 | 65.0 | 5.18e-01 | 98.2% | 57.2% |
| 3qo8A01 | 1.10.287.40 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain | 0.71 | 47.0 | 4.86e-01 | 75.0% | 70.8% |
| 4flaC00 | 6.10.250.2560 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.71 | 63.0 | 6.02e-01 | 98.2% | 83.5% |
| 2efkA01 | 1.20.1270.60 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain | 0.71 | 65.0 | 4.91e-01 | 100.0% | 65.6% |
| 4oydB00 | 1.10.132.20 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor | 0.71 | 49.0 | 4.90e-01 | 71.4% | 69.2% |
| 2oexA01 | 1.20.120.560 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › alix/aip1 in complex with the ypdl late domain | 0.71 | 52.0 | 4.74e-01 | 75.9% | 60.1% |
| 1l8dA00 | 1.10.287.510 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.70 | 53.0 | 5.48e-01 | 80.4% | 86.4% |
| 1avoB00 | 1.20.120.180 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Proteasome activator pa28, C-terminal domain | 0.69 | 53.0 | 4.92e-01 | 80.4% | 64.3% |
| 3s84A02 | 1.20.120.20 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Apolipoprotein | 0.69 | 52.0 | 4.62e-01 | 87.5% | 56.7% |
| 1jadA00 | 1.20.1230.10 | Mainly Alpha › Up-down Bundle › Phospholipase C Beta; Chain: A › Phospholipase C beta, distal C-terminal domain | 0.69 | 56.0 | 4.31e-01 | 86.6% | 90.9% |
| 3pltA00 | 1.20.1270.60 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain | 0.68 | 62.0 | 5.00e-01 | 100.0% | 60.7% |
| 3zdqA01 | 1.20.1560.10 | Mainly Alpha › Up-down Bundle › ABC transporter transmembrane region fold › ABC transporter type 1, transmembrane domain | 0.68 | 61.0 | 4.35e-01 | 99.1% | 94.3% |
| 4ke2A00 | 6.10.140.1860 | Special › Helix non-globular › Helix Hairpins › | 0.67 | 58.0 | 4.72e-01 | 92.9% | 52.0% |
| 4wpcA00 | 1.20.1270.60 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain | 0.67 | 61.0 | 4.55e-01 | 100.0% | 57.2% |
| 3cqcA00 | 1.20.190.50 | Mainly Alpha › Up-down Bundle › Delta-Endotoxin; domain 1 › | 0.67 | 51.0 | 3.91e-01 | 83.9% | 36.0% |
| 3ofnY00 | 1.10.287.80 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ATP synthase, gamma subunit, helix hairpin domain | 0.65 | 56.0 | 5.61e-01 | 100.0% | 90.4% |
| 6xj1A01 | 1.20.1270.60 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain | 0.65 | 58.0 | 4.51e-01 | 100.0% | 66.1% |
| 2d1lA00 | 1.20.1270.60 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain | 0.64 | 54.0 | 4.18e-01 | 92.9% | 58.6% |
| 4fwvA02 | 1.20.120.1680 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.62 | 42.0 | 4.02e-01 | 72.3% | 58.2% |
| 3rrkA02 | 1.20.1460.20 | Mainly Alpha › Up-down Bundle › subunit c (vma5p) of the yeast v-atpase, domain 2 › | 0.60 | 43.0 | 3.88e-01 | 75.0% | 54.2% |
| 3nrxA00 | 1.20.58.1520 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.60 | 46.0 | 4.43e-01 | 79.5% | 72.4% |
| 2m6bA00 | 1.20.58.390 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Neurotransmitter-gated ion-channel transmembrane domain | 0.59 | 41.0 | 3.76e-01 | 71.4% | 97.3% |
ECOD (66)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3708119 | 3285.1.1.1 ↗ | alpha duplicates or obligate multimers › Alix V domain › Alix V domain › Alix V domain › ALIX_LYPXL_bnd | 0.85 | 67.0 | 4.50e-01 | 82.1% | 25.3% |
| 3409209 | 3291.1.1.1 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Snf7 | 0.83 | 53.0 | 5.21e-01 | 72.3% | 60.8% |
| 3991023 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.82 | 53.0 | 5.65e-01 | 71.4% | 74.0% |
| 3318812 | 192.8.1.248 ↗ | alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain › KIF21A_4th | 0.80 | 68.0 | 6.08e-01 | 96.4% | 66.7% |
| 3337008 | 192.2.1.60 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › KIF21A_4th | 0.80 | 68.0 | 6.29e-01 | 98.2% | 72.1% |
| 4126623 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.80 | 68.0 | 4.19e-01 | 95.5% | 17.3% |
| 3350514 | 3922.1.1.145 ↗ | alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › KIF21A_4th | 0.79 | 68.0 | 5.94e-01 | 95.5% | 63.1% |
| 4604091 | 192.2.1.0 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin | 0.79 | 59.0 | 6.27e-01 | 81.2% | 87.0% |
| 3838987 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.79 | 61.0 | 4.94e-01 | 98.2% | 45.0% |
| 3840952 | 601.19.1.39 ↗ | alpha bundles › Four-helical up-and-down bundle › Apolipoprotein › Apolipoprotein › LIN9_C | 0.79 | 51.0 | 6.11e-01 | 75.0% | 97.3% |
| 3655688 | 3755.3.1.303 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › KIF21A_4th | 0.79 | 64.0 | 5.45e-01 | 85.7% | 97.1% |
| 3977409 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.78 | 61.0 | 5.71e-01 | 81.2% | 73.3% |
| 3694749 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.78 | 66.0 | 4.93e-01 | 88.4% | 38.8% |
| 3196934 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.78 | 61.0 | 5.45e-01 | 82.1% | 59.4% |
| 3495507 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.78 | 69.0 | 5.98e-01 | 98.2% | 64.2% |
| 5066104 | 2004.1.1.87 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N | 0.77 | 72.0 | 4.52e-01 | 100.0% | 60.7% |
| 3923871 | 192.2.1.48 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › PF26022 | 0.77 | 68.0 | 5.83e-01 | 98.2% | 61.8% |
| 4493879 | 4992.1.1.23 ↗ | extended segments › RelB-like › RelB-like › RelB-like › Seryl_tRNA_N | 0.77 | 52.0 | 5.32e-01 | 81.2% | 70.9% |
| 3699468 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.77 | 70.0 | 5.70e-01 | 98.2% | 56.5% |
| 4024356 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.76 | 59.0 | 5.22e-01 | 83.9% | 56.9% |
| 3964486 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.76 | 63.0 | 5.49e-01 | 89.3% | 60.0% |
| 4026040 | 2004.1.1.87 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N | 0.76 | 71.0 | 4.43e-01 | 100.0% | 63.6% |
| 4001186 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.76 | 69.0 | 5.73e-01 | 98.2% | 66.8% |
| 3699477 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.76 | 68.0 | 4.69e-01 | 98.2% | 31.0% |
| 4527091 | 192.2.1.3 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Rad50_zn_hook | 0.76 | 64.0 | 4.80e-01 | 89.3% | 41.2% |
| 3613695 | 3922.1.1.230 ↗ | alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › DRC10_N | 0.76 | 53.0 | 4.61e-01 | 77.7% | 50.0% |
| 3410024 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.76 | 67.0 | 4.95e-01 | 93.8% | 88.7% |
| 3614230 | 3922.1.1.0 ↗ | alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 | 0.76 | 65.0 | 4.47e-01 | 96.4% | 28.7% |
| 3235839 | 3755.4.1.0 ↗ | alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain | 0.75 | 62.0 | 5.26e-01 | 100.0% | 55.4% |
| 3785314 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.75 | 66.0 | 5.00e-01 | 95.5% | 42.4% |
| 3738267 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.75 | 67.0 | 6.05e-01 | 95.5% | 72.7% |
| 3554294 | 603.2.1.1 ↗ | alpha bundles › STAT-like › STAT › STAT › STAT_alpha | 0.75 | 70.0 | 5.67e-01 | 100.0% | 58.0% |
| 3565133 | 3755.3.1.44 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › JMY | 0.75 | 51.0 | 5.06e-01 | 70.5% | 66.7% |
| 3661101 | 3755.3.1.290 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › PPI_helical | 0.75 | 64.0 | 5.69e-01 | 96.4% | 65.8% |
| 3933048 | 4992.1.1.12 ↗ | extended segments › RelB-like › RelB-like › RelB-like › LIN9_C | 0.75 | 55.0 | 5.77e-01 | 94.6% | 85.0% |
| 3764842 | 209.1.1.1 ↗ | a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like › Lectin_C | 0.74 | 65.0 | 4.70e-01 | 97.3% | 34.8% |
| 3941435 | 601.4.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › Histidine kinase associated sensor domains › Histidine kinase associated sensor domains | 0.74 | 52.0 | 4.73e-01 | 77.7% | 54.0% |
| 3915989 | 2004.1.1.433 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_23 | 0.74 | 70.0 | 4.10e-01 | 100.0% | 71.7% |
| 3919840 | 3922.1.1.0 ↗ | alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 | 0.74 | 61.0 | 4.82e-01 | 86.6% | 80.5% |
| 4300897 | 5094.1.1.1 ↗ | a+b duplicates or obligate multimers › OmpH-like › OmpH-like › OmpH-like › OmpH | 0.74 | 59.0 | 5.63e-01 | 84.8% | 87.7% |
| 3705699 | 3922.1.1.0 ↗ | alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 | 0.74 | 51.0 | 4.21e-01 | 71.4% | 43.3% |
| 4420423 | 5094.1.1.1 ↗ | a+b duplicates or obligate multimers › OmpH-like › OmpH-like › OmpH-like › OmpH | 0.73 | 58.0 | 5.24e-01 | 84.8% | 66.5% |
| 3559586 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.73 | 56.0 | 5.07e-01 | 87.5% | 60.0% |
| 3947717 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.73 | 50.0 | 4.46e-01 | 70.5% | 99.4% |
| 5050733 | 192.8.1.0 ↗ | alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain | 0.73 | 55.0 | 5.70e-01 | 82.1% | 83.8% |
| 3906191 | 4323.1.1.1 ↗ | alpha bundles › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C › V_ATPase_I | 0.73 | 56.0 | 4.98e-01 | 81.2% | 58.1% |
| 5026250 | 3755.3.1.305 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › Rad50_zn_hook | 0.71 | 60.0 | 5.01e-01 | 92.9% | 53.7% |
| 3435097 | 4177.1.1.11 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › DUF632 | 0.71 | 63.0 | 4.79e-01 | 98.2% | 41.9% |
| 3282651 | 2004.1.1.5 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran | 0.70 | 62.0 | 4.00e-01 | 96.4% | 52.9% |
| 3784635 | 4177.1.1.1 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › FCH | 0.70 | 62.0 | 4.57e-01 | 98.2% | 37.9% |
| 5036055 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.70 | 61.0 | 4.30e-01 | 98.2% | 31.2% |
| 4275409 | 192.7.1.2 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N | 0.70 | 48.0 | 4.88e-01 | 75.0% | 71.8% |
| 4260979 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.69 | 60.0 | 4.54e-01 | 99.1% | 40.0% |
| 3634628 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.69 | 58.0 | 3.95e-01 | 100.0% | 25.1% |
| 4969098 | 3926.1.1.0 ↗ | alpha bundles › V-type proton ATPase subunit D › V-type proton ATPase subunit D › V-type proton ATPase subunit D | 0.69 | 59.0 | 5.12e-01 | 100.0% | 60.6% |
| 4500653 | 192.2.1.0 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin | 0.68 | 57.0 | 5.12e-01 | 89.3% | 66.0% |
| 3623410 | 2004.1.1.198 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 | 0.68 | 62.0 | 3.93e-01 | 98.2% | 21.1% |
| 3949633 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.68 | 58.0 | 4.77e-01 | 95.5% | 52.0% |
| 3404270 | 377.1.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like | 0.68 | 56.0 | 5.36e-01 | 90.2% | 76.2% |
| 4937604 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.67 | 51.0 | 5.09e-01 | 82.1% | 76.5% |
| 3649758 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.67 | 59.0 | 4.76e-01 | 99.1% | 54.2% |
| 3686252 | 3755.4.1.0 ↗ | alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain | 0.66 | 60.0 | 4.91e-01 | 100.0% | 55.0% |
| 5048802 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.66 | 55.0 | 4.68e-01 | 90.2% | 57.8% |
| 3521054 | 3755.4.1.0 ↗ | alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain | 0.66 | 61.0 | 5.04e-01 | 100.0% | 67.4% |
| 3207548 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.64 | 59.0 | 5.48e-01 | 100.0% | 85.7% |
| 4523046 | 3755.4.1.0 ↗ | alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain | 0.64 | 48.0 | 4.49e-01 | 78.6% | 70.4% |