←Back to structures
transcriptional_activator_protein
Euk-VirRhynchosia_yellow_mosaic_virus
transcriptional_activator_protein__YP_009508138__Rhynchosia_yellow_mosaic_virus__529680
Identity
- Accession:
- YP_009508138 ↗
- Protein ID:
- transcriptional_activator_protein
- Kingdom:
- euk
Quality
63.9
mean pLDDT
Taxonomy
Shotokuvirae›
Cressdnaviricota›
Repensiviricetes›
Geplafuvirales›
Geminiviridae›
Begomovirus›
Rhynchosia_yellow_mosaic_virus
TaxID: 529680
Cluster
View cluster (359 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 26-63
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01440.22 best | Gemini_AL2 | 46.8 | 5.60e-12 | 100.0% | 27.3% |
CATH (13)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5ja1B00 | 3.90.820.10 | Alpha Beta › Alpha-Beta Complex › Rubredoxin-like › Structural Genomics, Unknown Function 30-nov-00 1gh9 Mol_id | 0.62 | 43.0 | 3.69e-01 | 94.7% | 39.4% |
| 5ib9A01 | 3.40.630.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases | 0.61 | 50.0 | 3.00e-01 | 97.4% | 36.5% |
| 2e5wA01 | 2.30.140.10 | Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain | 0.57 | 38.0 | 3.45e-01 | 76.3% | 48.2% |
| 3mlqH00 | 2.40.10.170 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.56 | 38.0 | 3.84e-01 | 84.2% | 71.4% |
| 2byvE05 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.55 | 42.0 | 3.51e-01 | 92.1% | 54.4% |
| 3e66A01 | 3.30.420.230 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Prp8 RNase H domain, palm region | 0.54 | 41.0 | 2.91e-01 | 97.4% | 49.7% |
| 1ci3M02 | 2.40.50.100 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | 0.54 | 44.0 | 3.90e-01 | 94.7% | 69.0% |
| 2mamA00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.54 | 38.0 | 2.82e-01 | 71.1% | 66.1% |
| 1nqzA00 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.53 | 37.0 | 2.53e-01 | 78.9% | 21.1% |
| 1se8A02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.53 | 44.0 | 3.27e-01 | 100.0% | 68.5% |
| 4n4iA02 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.52 | 41.0 | 3.24e-01 | 94.7% | 52.2% |
| 2jzlA00 | 2.30.60.10 | Mainly Beta › Roll › HIV-inactivating Protein, Cyanovirin-n › Cyanovirin-N | 0.52 | 40.0 | 3.08e-01 | 97.4% | 85.6% |
| 5i2cB01 | 3.30.2130.10 | Alpha Beta › 2-Layer Sandwich › VC0802-like › VC0802-like | 0.50 | 41.0 | 2.88e-01 | 100.0% | 41.8% |
ECOD (9)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3585488 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.60 | 46.0 | 3.20e-01 | 100.0% | 53.9% |
| 281 | 264.2.1.0 ↗ | beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain | 0.59 | 42.0 | 3.63e-01 | 78.9% | 84.8% |
| 3436417 | 1.1.1.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease › RVP_2 | 0.58 | 44.0 | 3.29e-01 | 97.4% | 70.0% |
| 4066557 | 325.1.7.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif | 0.54 | 40.0 | 3.31e-01 | 89.5% | 49.4% |
| 3573721 | 304.48.1.0 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like | 0.53 | 42.0 | 2.80e-01 | 86.8% | 90.0% |
| 3972552 | 7529.1.1.1 ↗ | a/b three-layered sandwiches › Macro domain-like › Macro domain-like › Macro domain-like › Macro | 0.53 | 38.0 | 2.52e-01 | 78.9% | 61.8% |
| 167439 | 705.1.1.1 ↗ | beta duplicates or obligate multimers › Cyanovirin-N › Cyanovirin-N › Cyanovirin-N › CVNH | 0.52 | 40.0 | 3.08e-01 | 97.4% | 85.6% |
| 4159666 | 325.1.7.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif | 0.50 | 40.0 | 3.00e-01 | 97.4% | 34.9% |
| 4127839 | 325.1.7.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif | 0.50 | 41.0 | 3.40e-01 | 100.0% | 53.3% |