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transcriptional_control_protein

Euk-Vir

Bovine_gammaherpesvirus_6

transcriptional_control_protein__YP_009042026__Bovine_gammaherpesvirus_6__1504288

Identity

Accession:
YP_009042026 ↗
Protein ID:
transcriptional_control_protein
Kingdom:
euk

Quality

86.1 mean pLDDT

Taxonomy

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Macavirus› Bovine_gammaherpesvirus_6

TaxID: 1504288

Cluster

View cluster (19 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 88-246
PDB
Domain cluster: rep: BRRF1__YP_010087490__Phascolarctid_gammaherpesvirus_1__2249313__D80-237
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF04793.18 best Herpes_BBRF1 54.0 1.90e-14 100.0% 52.1%
D2 medium residues 29-87
PDB
Domain cluster: representative
CATH (22)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2bskB00 1.10.287.810 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Mitochondrial import inner membrane translocase subunit tim13 like domains 0.73 60.0 5.83e-01 89.8% 90.8%
3udcA01 1.10.287.1260 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.73 62.0 4.97e-01 94.9% 54.8%
4ev6A03 1.20.58.340 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Magnesium transport protein CorA, transmembrane region 0.70 56.0 5.70e-01 86.4% 98.3%
3r84B00 6.10.280.160 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Mediator of RNA polymerase II transcription subunit 22 0.66 60.0 5.33e-01 98.3% 86.3%
4iylA01 1.10.287.10 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › S15/NS1, RNA-binding 0.66 49.0 5.22e-01 81.4% 92.3%
3g80A00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.66 56.0 5.26e-01 98.3% 76.7%
3itfA00 1.20.120.1490 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.65 54.0 4.38e-01 91.5% 63.1%
6ynwH01 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.63 56.0 5.20e-01 98.3% 86.5%
3besR03 6.10.140.1480 Special › Helix non-globular › Helix Hairpins › 0.63 47.0 4.80e-01 93.2% 83.9%
6whcA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.62 56.0 3.73e-01 100.0% 37.9%
4i0xG00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.60 52.0 5.00e-01 96.6% 89.7%
1ivyB00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.60 50.0 2.98e-01 93.2% 30.4%
6pe0E01 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.59 38.0 3.96e-01 74.6% 71.7%
3hr0B01 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.59 51.0 4.68e-01 100.0% 75.9%
1egdA03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.58 52.0 3.93e-01 100.0% 41.8%
2pg0A03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.57 52.0 3.82e-01 100.0% 39.6%
1rx0A03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.57 51.0 3.73e-01 100.0% 38.1%
3qa8A04 1.20.1270.250 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.56 48.0 3.25e-01 98.3% 45.1%
1siqA03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.56 50.0 3.69e-01 100.0% 38.1%
2wbiB03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.56 49.0 3.61e-01 100.0% 37.3%
3lphC00 6.10.140.630 Special › Helix non-globular › Helix Hairpins › 0.55 44.0 4.43e-01 91.5% 96.6%
2hkeA02 3.30.70.890 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GHMP kinase, C-terminal domain 0.54 44.0 3.05e-01 88.1% 29.1%
ECOD (13)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3647944 148.1.1.4 ↗ alpha arrays › Histone-like › Histone-related › Histone › CBFD_NFYB_HMF 0.74 55.0 4.53e-01 79.7% 54.3%
3616295 148.1.1.0 ↗ alpha arrays › Histone-like › Histone-related › Histone 0.73 55.0 4.87e-01 81.4% 69.4%
3673285 3291.1.1.0 ↗ alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related 0.66 56.0 4.68e-01 94.9% 56.2%
4117640 7510.1.1.3 ↗ a/b three-layered sandwiches › Isocitrate/Isopropylmalate dehydrogenase-like › Isocitrate/Isopropylmalate dehydrogenase-like › Isocitrate/Isopropylmalate dehydrogenase-like › FA_synthesis 0.64 48.0 3.40e-01 79.7% 70.0%
3940619 109.4.1.2546 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › ANAPC3, TPR_8, TPR_17, CHIP_TPR_N 0.64 56.0 3.86e-01 96.6% 30.5%
None — 0.63 55.0 3.46e-01 100.0% 23.7%
3480326 109.40.1.2 ↗ alpha superhelices › Repetitive alpha hairpins › DNA polymerase alpha-binding protein Ctf4 C-terminal domain › DNA polymerase alpha-binding protein Ctf4 C-terminal domain › Ctf4_C 0.63 52.0 3.99e-01 88.1% 59.2%
4545543 517.2.1.1 ↗ beta barrels › CBF-like › TraF › TraF › TrbI 0.61 50.0 3.44e-01 94.9% 26.6%
3210910 102.1.1.62 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › DUF4473 0.58 46.0 4.15e-01 84.7% 62.5%
3244102 192.8.1.0 ↗ alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain 0.58 54.0 4.28e-01 100.0% 89.1%
3448960 650.1.1.0 ↗ alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain 0.57 46.0 4.24e-01 100.0% 67.1%
4678343 7566.1.1.1 ↗ a/b three-layered sandwiches › HflX family GTPase N-terminal domain › HflX family GTPase N-terminal domain › HflX family GTPase N-terminal domain › GTP-bdg_N,GTP-bdg_M 0.57 50.0 3.58e-01 98.3% 38.3%
4993263 3361.1.1.0 ↗ alpha bundles › C-terminal Pdr1-activating domain of J-protein Zuo1 › C-terminal Pdr1-activating domain of J-protein Zuo1 › C-terminal Pdr1-activating domain of J-protein Zuo1 0.51 36.0 3.33e-01 76.3% 56.2%
D3 medium residues 247-329
PDB
Domain cluster: rep: ORF49__YP_438172__Ovine_gammaherpesvirus_2__10398__D252-324