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transcriptional_elongation_factor

Euk-Vir

Nile_crocodilepox_virus

transcriptional_elongation_factor__YP_784264__Nile_crocodilepox_virus__1285600

Identity

Accession:: YP_784264 ↗
Protein ID:: transcriptional_elongation_factor
Kingdom:: euk

Quality

89.2 mean pLDDT

Cluster

View cluster (28 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-66

PDB

Domain cluster: rep: putative_transcriptional_elongation_factor__YP_009447997__Flamingopox_virus_FGPVKD09__2059380__D3-70_206-223

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF05796.19 best	Chordopox_G2	59.8	3.90e-16	100.0%	32.1%

D2 high residues 85-176

PDB

Domain cluster: rep: CPXV090_protein__NP_619877__Cowpox_virus__10243__D88-174

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF05796.19 best	Chordopox_G2	57.8	1.60e-15	100.0%	40.5%

CATH (11)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
6jifA02	3.20.10.10	Alpha Beta › Alpha-Beta Barrel › D-amino Acid Aminotransferase; Chain A, domain 2 › D-amino Acid Aminotransferase, subunit A, domain 2	0.65	52.0	4.19e-01	87.0%	83.8%
3mpoA02	3.30.1240.10	Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 ›	0.61	47.0	4.49e-01	82.6%	79.4%
1nf2A02	3.30.1240.10	Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 ›	0.59	45.0	4.35e-01	82.6%	78.3%
3snoA02	3.20.10.10	Alpha Beta › Alpha-Beta Barrel › D-amino Acid Aminotransferase; Chain A, domain 2 › D-amino Acid Aminotransferase, subunit A, domain 2	0.59	49.0	4.51e-01	92.4%	92.7%
4dw8A02	3.30.1240.10	Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 ›	0.59	45.0	4.32e-01	82.6%	80.2%
3dfuA01	3.40.50.720	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain	0.56	41.0	3.74e-01	78.3%	62.8%
6juyC01	3.75.10.10	Alpha Beta › 5-stranded Propeller › L-arginine/glycine Amidinotransferase; Chain A › L-arginine/glycine Amidinotransferase; Chain A	0.55	47.0	3.43e-01	95.7%	95.8%
4u1qA02	3.40.50.150	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39	0.53	44.0	3.63e-01	95.7%	74.9%
7bv5D01	3.40.140.10	Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2	0.53	48.0	3.94e-01	98.9%	85.3%
1wu7A03	3.40.50.800	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain	0.53	37.0	3.65e-01	71.7%	85.6%
5khaB01	3.60.110.10	Alpha Beta › 4-Layer Sandwich › Nitrilase/N-carbamoyl-D-aminoacid amidohydrolase › Carbon-nitrogen hydrolase	0.51	43.0	3.17e-01	95.7%	95.8%

ECOD (8)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3879654	2007.1.1.0 ↗	a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Class I glutamine amidotransferase-like	0.64	47.0	3.63e-01	77.2%	42.9%
3737722	3012.1.1.0 ↗	a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain	0.62	46.0	4.41e-01	80.4%	85.5%
4031792	2004.1.1.36 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Dynamin_N	0.60	43.0	3.34e-01	78.3%	79.1%
3189298	7568.1.1.0 ↗	a/b three-layered sandwiches › BRCT domain › BRCT domain › BRCT domain	0.56	40.0	3.68e-01	78.3%	87.7%
4044009	3012.1.1.0 ↗	a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain	0.55	43.0	4.07e-01	83.7%	80.9%
4418041	2006.1.1.11 ↗	a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase_3	0.55	45.0	3.26e-01	91.3%	65.9%
4983798	299.1.1.1 ↗	a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain › tRNA_edit	0.54	40.0	3.44e-01	78.3%	69.9%
4928820	315.1.1.0 ↗	a+b two layers › Tautomerase/MIF-like › Tautomerase/MIF › Tautomerase/MIF	0.52	36.0	3.05e-01	73.9%	88.7%

D3 medium residues 67-81_185-233

PDB

Domain cluster: representative

CATH (21)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1tjoB00	1.20.1260.10	Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle	0.72	57.0	4.18e-01	87.5%	56.0%
2pusA04	6.10.140.300	Special › Helix non-globular › Helix Hairpins ›	0.66	45.0	3.80e-01	70.3%	56.5%
3purA03	1.20.58.1360	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.66	49.0	4.09e-01	79.7%	67.3%
2qkoA00	1.10.357.10	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2	0.66	49.0	3.56e-01	79.7%	45.4%
3cqcB01	1.20.58.1380	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.65	44.0	4.00e-01	71.9%	70.0%
3ebbA00	1.25.10.10	Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant	0.64	54.0	3.56e-01	93.8%	79.5%
6xxvC00	1.10.132.20	Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor	0.63	47.0	3.92e-01	79.7%	89.2%
1s5jA04	1.10.287.690	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › B family DNA polymerase, finger domain	0.61	45.0	4.67e-01	92.2%	82.0%
2oxlA00	1.20.5.5260	Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces ›	0.60	46.0	4.69e-01	84.4%	96.8%
1urfA00	1.10.287.160	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat	0.60	49.0	4.54e-01	87.5%	76.5%
5jcpB01	1.10.555.10	Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase; Chain A › Rho GTPase activation protein	0.60	50.0	3.53e-01	90.6%	33.8%
1m56C02	1.20.120.80	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Cytochrome c oxidase, subunit III, four-helix bundle	0.60	53.0	3.75e-01	100.0%	51.0%
2qyuA02	1.25.40.300	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Putative secreted effector protein	0.59	46.0	3.29e-01	85.9%	64.1%
4jgwA01	1.20.870.10	Mainly Alpha › Up-down Bundle › Son of sevenless (SoS) protein; Chain S, domain 1 › Son of sevenless (SoS) protein Chain: S domain 1	0.59	46.0	3.53e-01	87.5%	53.2%
2vxxA00	1.20.1260.10	Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle	0.58	46.0	3.43e-01	89.1%	68.6%
1vfiA00	1.10.246.100	Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › Vanadium-binding protein 2	0.57	46.0	4.03e-01	89.1%	69.5%
3l8rA00	1.20.58.80	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit	0.57	47.0	4.01e-01	90.6%	80.4%
2ovjA00	1.10.555.10	Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase; Chain A › Rho GTPase activation protein	0.55	41.0	3.03e-01	85.9%	77.6%
3bjbD00	1.10.357.10	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2	0.54	49.0	3.55e-01	100.0%	54.0%
3mnlB00	1.10.357.10	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2	0.53	47.0	3.42e-01	100.0%	47.8%
2rn7A01	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.51	40.0	4.04e-01	92.2%	84.8%

ECOD (15)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4958743	604.1.1.0 ↗	alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat	0.76	52.0	4.26e-01	71.9%	80.9%
3813850	3930.1.1.0 ↗	alpha bundles › Helical bundle insertion in helicase domains › Helical bundle in Hef helicase › Helical bundle in Hef helicase	0.75	66.0	5.07e-01	96.9%	69.3%
4385544	605.1.1.0 ↗	alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase	0.67	50.0	4.78e-01	89.1%	68.0%
3596608	1134.1.1.0 ↗	alpha bundles › C-terminal helical domain of alanine-tRNA ligase › C-terminal helical domain of alanine-tRNA ligase › Eukaryotic C-Ala helical domain	0.67	48.0	4.39e-01	76.6%	81.2%
4030521	604.12.1.2 ↗	alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › Vta1	0.67	48.0	4.55e-01	75.0%	82.7%
3347110	3684.1.1.2 ↗	alpha complex topology › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like › BPS1	0.66	57.0	3.73e-01	92.2%	67.5%
3245526	604.1.1.0 ↗	alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat	0.65	48.0	4.15e-01	81.2%	90.5%
3796589	604.12.1.1 ↗	alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › MIT	0.64	46.0	3.99e-01	76.6%	77.0%
3711198	650.1.1.1 ↗	alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ	0.63	53.0	4.80e-01	90.6%	71.8%
4311810	605.1.1.1 ↗	alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA	0.63	52.0	4.91e-01	87.5%	77.3%
5044676	109.61.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › Uncharacterized protein PF2048.1 › Uncharacterized protein PF2048.1	0.61	44.0	4.44e-01	79.7%	98.5%
3662533	603.1.1.138 ↗	alpha bundles › STAT-like › t-snare proteins › t-snare proteins › BPS1	0.60	45.0	4.03e-01	79.7%	92.2%
3413742	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.60	47.0	3.62e-01	85.9%	67.6%
3224003	9001.1.1.3 ↗	alpha bundles › TMEM120/ELO/TLC › TMEM120/ELO/TLC › TMEM120/ELO/TLC › TMPIT	0.57	46.0	4.27e-01	85.9%	80.0%
3266910	189.1.1.2 ↗	alpha bundles › GTPase activation domain, GAP › GTPase activation domain, GAP › GTPase activation domain, GAP › RhoGAP	0.56	46.0	3.27e-01	89.1%	62.6%