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transmembrane_domain-containing_protein
Euk-VirNoumeavirus
transmembrane_domain-containing_protein__YP_009345326__Noumeavirus__1955558
Identity
- Accession:
- YP_009345326 ↗
- Protein ID:
- transmembrane_domain-containing_protein
- Kingdom:
- euk
Quality
69.0
mean pLDDT
Taxonomy
Bamfordvirae›
Nucleocytoviricota›
Megaviricetes›
Pimascovirales›
Marseilleviridae›
Marseillevirus›
Noumeavirus
TaxID: 1955558
Cluster
View cluster (13 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 13-72
D2
high
residues 285-351
D3
medium
residues 79-168
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF19175.6 best | DUF5857 | 161.3 | 4.80e-47 | 100.0% | 31.0% |
CATH (13)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2yvyA01 | 1.25.60.10 | Mainly Alpha › Alpha Horseshoe › MgtE N-terminal fold › MgtE N-terminal domain-like | 0.65 | 47.0 | 4.22e-01 | 96.7% | 54.4% |
| 3usyA01 | 1.10.220.30 | Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › Flagellar motor switch protein FliG, alpha-alpha superhelical domain | 0.65 | 42.0 | 4.13e-01 | 96.7% | 61.5% |
| 1avcA07 | 1.10.220.10 | Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › Annexin | 0.64 | 46.0 | 5.01e-01 | 100.0% | 92.0% |
| 3pvlA01 | 1.25.40.530 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › MyTH4 domain | 0.59 | 53.0 | 4.00e-01 | 97.8% | 70.2% |
| 5fglA00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.57 | 50.0 | 3.94e-01 | 100.0% | 62.5% |
| 4j8sA00 | 1.25.40.840 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › CCR4-NOT transcription complex subunit 1 TTP binding domain | 0.56 | 50.0 | 4.01e-01 | 100.0% | 61.7% |
| 2oocB00 | 1.20.120.160 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain | 0.53 | 36.0 | 3.48e-01 | 70.0% | 89.5% |
| 6srbA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.52 | 45.0 | 4.27e-01 | 98.9% | 84.4% |
| 6fahC01 | 1.10.540.10 | Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain | 0.52 | 45.0 | 4.08e-01 | 94.4% | 78.2% |
| 1gcvA00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.52 | 39.0 | 3.43e-01 | 82.2% | 77.9% |
| 3ii9B01 | 1.10.540.10 | Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain | 0.51 | 42.0 | 3.81e-01 | 93.3% | 66.9% |
| 3hyuA00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.51 | 39.0 | 3.40e-01 | 82.2% | 78.0% |
| 1eyvB00 | 1.10.940.10 | Mainly Alpha › Orthogonal Bundle › N-utilizing Substance Protein B Homolog; Chain A › NusB-like | 0.50 | 43.0 | 3.76e-01 | 93.3% | 95.5% |
ECOD (11)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3617802 | 109.4.1.1216 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › ARM_KNTC1_1st | 0.60 | 46.0 | 4.44e-01 | 100.0% | 71.4% |
| 3832974 | 109.4.1.1963 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF30979 | 0.57 | 46.0 | 3.53e-01 | 100.0% | 36.4% |
| 3585180 | 109.4.1.1316 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Suf, HAT_PRP39_N, HAT_PRP39_C | 0.56 | 46.0 | 2.80e-01 | 100.0% | 12.9% |
| 3238182 | 109.4.1.243 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Zmiz1_N | 0.55 | 48.0 | 4.59e-01 | 100.0% | 81.9% |
| 3271745 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.55 | 48.0 | 4.17e-01 | 100.0% | 75.2% |
| 3668484 | 109.1.1.6 ↗ | alpha superhelices › Repetitive alpha hairpins › Glutathione S-transferase (GST)-C › Glutathione S-transferase (GST)-C › GST_C_2 | 0.54 | 47.0 | 3.99e-01 | 100.0% | 72.5% |
| 3518241 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.54 | 47.0 | 3.64e-01 | 100.0% | 42.3% |
| 1349376 | 4033.1.1.1 ↗ | alpha arrays › Acyl-CoA dehydrogenase N-terminal domain-like › Acyl-CoA dehydrogenase N-terminal domain-like › Acyl-CoA dehydrogenase N-terminal domain-like › Acyl-CoA_dh_N | 0.53 | 42.0 | 3.88e-01 | 92.2% | 64.5% |
| 3954215 | 2002.1.1.41 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › A_deaminase | 0.51 | 44.0 | 3.00e-01 | 100.0% | 28.8% |
| 4266867 | 1002.1.1.1 ↗ | alpha complex topology › Fluoride ion channel › Fluoride ion channel › Fluoride ion channel › CRCB | 0.51 | 44.0 | 4.06e-01 | 97.8% | 80.5% |
| 4198348 | 195.1.1.1 ↗ | alpha complex topology › NusB-like › NusB-like › NusB-like › NusB | 0.50 | 43.0 | 3.82e-01 | 94.4% | 96.2% |
D4
medium
residues 169-284
Domain cluster:
rep: hypothetical_protein_A3303_gp339__YP_009238844__Brazilian_marseillevirus__1813599__D196-299
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF19175.6 best | DUF5857 | 203.9 | 4.80e-60 | 100.0% | 40.1% |
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4nl4H03 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.51 | 38.0 | 3.28e-01 | 80.2% | 78.1% |