transmembrane_domain_2

Euk-Vir

Bovine_coronavirus

transmembrane_domain_2__NP_742170__Bovine_coronavirus__11128

Identity

82.0 mean pLDDT

Orthornavirae› Pisuviricota› Pisoniviricetes› Nidovirales› Coronaviridae› Betacoronavirus› Bovine_coronavirus

TaxID: 11128

View cluster (24 members)

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high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 276-372

PDB

Domain cluster: rep: nsp4__YP_009924386__Rousettus_bat_coronavirus_HKU9__694006__D276-394

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF19217.6 best	CoV_NSP4_N	76.0	5.40e-21	100.0%	26.7%

D2 high residues 409-483

PDB

Domain cluster: rep: nsp4_-TM2-__YP_009944272__Human_coronavirus_HKU1__290028__D409-483

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF16348.11 best	CoV_NSP4_C	109.6	1.60e-31	100.0%	77.1%

D3 medium residues 30-152

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF19217.6 best	CoV_NSP4_N	105.8	4.90e-30	99.2%	31.0%

CATH (1)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1z7mE02	3.40.190.10	Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II	0.50	33.0	3.78e-01	73.2%	96.4%

D4 medium residues 196-271

PDB

Domain cluster: rep: NSP4__YP_001941177__Turkey_coronavirus__11152__D222-291

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF19217.6 best	CoV_NSP4_N	89.7	3.70e-25	100.0%	20.7%