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transmembrane_envelope_protein

Euk-Vir

Snakehead_virus

transmembrane_envelope_protein__NP_050583__Snakehead_virus__103603

Identity

Accession:
NP_050583 ↗
Protein ID:
transmembrane_envelope_protein
Kingdom:
euk

Quality

60.6 mean pLDDT

Cluster

View cluster (24 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 48-73_302-423
PDB
Domain cluster: rep: glycoprotein__YP_010086563__Kwatta_virus__1272945__D21-47_334-461
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF24833.2 best Rhabdo_glycop_CD 83.4 2.00e-23 79.0% 92.6%
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4d6wA01 2.30.30.640 Mainly Beta › Roll › SH3 type barrels. › Rhabdovirus spike glycoprotein G, lateral domain 0.71 43.0 5.39e-01 91.2% 96.7%
4d6wB02 6.10.140.740 Special › Helix non-globular › Helix Hairpins › 0.65 34.0 4.27e-01 85.1% 81.5%
ECOD (1)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3518786 509.1.1.1 ↗ alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain › PAH 0.52 36.0 4.15e-01 88.5% 100.0%
D2 medium residues 26-42_78-93_222-296
PDB
D3 medium residues 94-106_173-221
PDB
Domain cluster: representative
CATH (19)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7vcnA02 2.60.40.1140 Mainly Beta › Sandwich › Immunoglobulin-like › Collagen-binding surface protein Cna, B-type domain 0.70 44.0 3.71e-01 88.7% 37.9%
7mhwA01 2.40.128.10 Mainly Beta › Beta Barrel › Lipocalin › 0.61 46.0 4.19e-01 85.5% 95.5%
2wstA00 2.60.90.10 Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › Adenovirus pIV-related, attachment domain 0.57 49.0 3.58e-01 98.4% 34.7%
3vgiA00 2.60.120.180 Mainly Beta › Sandwich › Jelly Rolls › Glycoside hydrolase family 11/12, catalytic domain 0.57 48.0 3.15e-01 95.2% 23.0%
2f0cA02 2.60.40.1830 Mainly Beta › Sandwich › Immunoglobulin-like › Phage tail base-plate Siphoviridae RBP, head domain 0.57 40.0 3.47e-01 96.8% 45.2%
5d3xB00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 46.0 3.65e-01 95.2% 81.6%
5trdA02 2.40.30.30 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Riboflavin kinase-like 0.56 47.0 3.63e-01 91.9% 48.1%
2rgnB02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 43.0 3.62e-01 90.3% 67.5%
5bxrA03 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.56 43.0 3.33e-01 83.9% 55.3%
2w5eA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.55 42.0 3.98e-01 91.9% 70.3%
1fyhB02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 41.0 3.62e-01 96.8% 52.4%
7byjA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 40.0 3.68e-01 90.3% 83.2%
4me3A03 2.20.28.10 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.53 39.0 4.11e-01 91.9% 96.4%
2cofA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 41.0 3.58e-01 93.5% 83.2%
4g54A01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.51 45.0 3.61e-01 100.0% 72.0%
3p26A03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.51 40.0 3.37e-01 88.7% 75.5%
4gzuB03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 39.0 3.58e-01 90.3% 87.9%
1eh7A01 3.30.160.70 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Methylated DNA-protein cysteine methyltransferase domain 0.50 36.0 3.52e-01 77.4% 78.6%
4ioyX02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.50 42.0 3.53e-01 98.4% 78.3%
ECOD (28)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1503409 220.3.1.1 ↗ beta barrels › PH domain-like › first barrel domain in viral glycoproteins › first barrel domain in viral glycoproteins › Rhabdo_glycop 0.84 72.0 5.50e-01 91.9% 99.2%
4223228 101.1.9.21 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › Swi6_N 0.67 51.0 4.52e-01 82.3% 100.0%
3475247 4184.1.1.1 ↗ beta barrels › MFPT repeat › MFPT repeat › MFPT repeat › DM9 0.62 44.0 4.29e-01 96.8% 67.1%
4120420 295.1.1.15 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › UPF0128 0.62 46.0 3.79e-01 96.8% 43.5%
3268231 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.60 49.0 4.09e-01 95.2% 90.4%
3483268 4184.1.1.0 ↗ beta barrels › MFPT repeat › MFPT repeat › MFPT repeat 0.59 42.0 4.00e-01 96.8% 62.7%
3287105 5084.1.1.33 ↗ beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › DUF6004 0.58 47.0 3.54e-01 96.8% 92.0%
5009960 10.1.1.15 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Glyco_hydro_12 0.58 49.0 3.26e-01 100.0% 25.7%
3479370 220.1.1.94 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › CLEC16A_C 0.57 46.0 3.56e-01 95.2% 70.0%
3266245 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 48.0 3.97e-01 98.4% 82.5%
4000033 220.1.1.119 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Syntrophin_4th 0.57 47.0 3.92e-01 95.2% 77.4%
3668294 12.3.1.3 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Aldose_epim 0.56 40.0 2.67e-01 77.4% 96.4%
3995153 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 46.0 3.94e-01 93.5% 82.9%
3214168 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 43.0 3.61e-01 93.5% 71.2%
3060767 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.53 39.0 4.13e-01 96.8% 98.0%
3937468 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 41.0 3.56e-01 90.3% 76.4%
3244334 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 44.0 3.60e-01 95.2% 54.2%
1921561 1110.1.1.0 ↗ beta sandwiches › Flagellar hook subunit protein FlgE beta sandwich domain › Flagellar hook subunit protein FlgE beta sandwich domain › Flagellar hook subunit protein FlgE beta sandwich domain 0.53 44.0 3.37e-01 100.0% 61.3%
953 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.52 41.0 3.68e-01 91.9% 92.6%
5075340 211.1.1.7 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase_4 0.52 41.0 3.28e-01 90.3% 66.4%
3916753 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.52 43.0 3.35e-01 100.0% 80.0%
3909061 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.52 41.0 3.55e-01 90.3% 76.2%
3826272 219.1.1.3 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.52 43.0 2.79e-01 100.0% 86.6%
4941553 4004.1.1.3 ↗ beta sandwiches › NAD kinase beta sandwich domain-like › NAD kinase beta sandwich domain-like › NAD kinase beta sandwich domain-like › NAD_kinase_C 0.51 42.0 3.32e-01 96.8% 95.2%
3923810 1.1.1.0 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease 0.51 45.0 3.71e-01 100.0% 97.4%
3602399 205.1.1.16 ↗ a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › Fer4_7 0.51 38.0 3.06e-01 82.3% 58.5%
3936469 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.50 36.0 3.27e-01 85.5% 54.4%
3607898 375.1.1.58 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › MCM_OB 0.50 36.0 3.73e-01 93.5% 90.9%
D4 medium residues 107-172
PDB