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transport_capsid_assembly

Euk-Vir

Human_betaherpesvirus_6B

transport_capsid_assembly__NP_050221__Human_betaherpesvirus_6B__32604

Identity

Accession:: NP_050221 ↗
Protein ID:: transport_capsid_assembly
Kingdom:: euk

Quality

75.9 mean pLDDT

Taxonomy

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Roseolovirus› Human_betaherpesvirus_6B

TaxID: 32604

Cluster

View cluster (77 members)

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-131

PDB

Domain cluster: rep: transport_protein__YP_004207847__Cricetid_gammaherpesvirus_2__1605972__D1-97

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01366.24 best	PRTP	137.3	7.10e-40	97.7%	19.4%

D2 medium residues 132-225_473-499

PDB

Domain cluster: rep: GP56__YP_007417831__Caviid_betaherpesvirus_2__33706__D136-147_175-227_482-509

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01366.24 best	PRTP	133.9	8.00e-39	77.7%	13.9%

CATH (15)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4zqeA03	1.10.1740.10	Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif	0.72	29.0	3.27e-01	81.8%	47.9%
3whjA00	6.10.140.1710	Special › Helix non-globular › Helix Hairpins ›	0.60	44.0	4.59e-01	97.5%	82.0%
2xvtC00	1.10.150.510	Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Receptor activity modifying family	0.60	37.0	4.39e-01	96.7%	93.7%
4ceiA03	6.10.250.2380	Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces ›	0.60	38.0	3.93e-01	98.3%	67.9%
3nvoB02	1.20.58.340	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Magnesium transport protein CorA, transmembrane region	0.59	48.0	4.90e-01	99.2%	88.8%
1hciA03	1.20.58.60	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.56	46.0	4.65e-01	96.7%	88.3%
3terA00	1.10.287.3550	Mainly Alpha › Orthogonal Bundle › Helix Hairpins ›	0.54	36.0	3.63e-01	82.6%	68.1%
3wfwA00	1.10.490.10	Mainly Alpha › Orthogonal Bundle › Globin-like › Globins	0.53	31.0	3.01e-01	89.3%	49.3%
3nlcA02	3.50.50.60	Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain	0.53	44.0	3.50e-01	90.1%	50.6%
2pyxA01	3.50.50.60	Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain	0.53	41.0	3.40e-01	90.1%	46.7%
1zkeA00	1.20.58.90	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.52	33.0	3.88e-01	83.5%	93.8%
2looA02	1.10.10.1740	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Transmembrane protein 14-like	0.51	32.0	3.79e-01	94.2%	98.7%
4iv6B01	1.10.540.10	Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain	0.51	32.0	3.30e-01	90.9%	64.7%
1dvoA00	1.10.1710.10	Mainly Alpha › Orthogonal Bundle › Fertility Inhibition Protein O; Chain: A; Domain 1 › ProQ/FinO domain	0.51	31.0	2.95e-01	81.0%	48.7%
7d3uC01	1.10.287.3510	Mainly Alpha › Orthogonal Bundle › Helix Hairpins ›	0.50	31.0	3.33e-01	82.6%	70.1%

ECOD (11)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4958521	603.1.1.0 ↗	alpha bundles › STAT-like › t-snare proteins › t-snare proteins	0.86	45.0	6.07e-01	90.9%	95.4%
5010063	604.24.1.1 ↗	alpha bundles › Spectrin repeat-like › Helical bundle domain in putative transcriptional regulator Jann_0659-related proteins › Helical bundle domain in putative transcriptional regulator Jann_0659-related proteins › PaaX_C	0.75	48.0	5.26e-01	97.5%	78.0%
3501454	4163.1.2.0 ↗	alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF2 C-terminal domain-like	0.67	38.0	4.19e-01	100.0%	69.5%
3414939	5082.1.1.1 ↗	alpha bundles › Cation efflux protein transmembrane domain-like › Cation efflux protein transmembrane domain-like › Cation efflux protein transmembrane domain-like › Cation_efflux	0.59	54.0	4.47e-01	100.0%	84.8%
4017353	109.4.1.17 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Cullin	0.55	38.0	2.53e-01	90.1%	17.9%
4026081	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.54	50.0	3.84e-01	100.0%	60.0%
3272022	609.1.1.1 ↗	alpha bundles › Domain of poly(ADP-ribose) polymerase › Domain of poly(ADP-ribose) polymerase › Domain of poly(ADP-ribose) polymerase › PARP_reg	0.53	45.0	4.22e-01	91.7%	74.0%
3772061	109.4.1.809 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Codanin-1_C	0.53	39.0	2.80e-01	96.7%	25.8%
1786501	2003.1.2.12 ↗	a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › DAO	0.52	44.0	3.77e-01	92.6%	61.5%
5070574	2003.1.3.3 ↗	a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › Pyr_redox_2	0.52	33.0	2.76e-01	90.1%	35.2%
3272748	148.1.1.4 ↗	alpha arrays › Histone-like › Histone-related › Histone › CBFD_NFYB_HMF	0.52	32.0	3.09e-01	77.7%	51.4%

D3 medium residues 228-362

PDB

D4 medium residues 363-401_441-472

PDB

D5 medium residues 500-687

PDB

Domain cluster: rep: DNA_packaging_terminase_subunit_2__YP_081515__Human_betaherpesvirus_5__10359__D575-765

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01366.24 best	PRTP	171.4	3.60e-50	60.1%	17.1%