←Back to structures

triple_gene_block_protein_3

Euk-Vir

Potato_latent_virus

triple_gene_block_protein_3__YP_002302560__Potato_latent_virus__138982

Identity

Accession:: YP_002302560 ↗
Protein ID:: triple_gene_block_protein_3
Kingdom:: euk

Quality

74.3 mean pLDDT

Taxonomy

Orthornavirae› Kitrinoviricota› Alsuviricetes› Tymovirales› Betaflexiviridae› Carlavirus› Potato_latent_virus

TaxID: 138982

Cluster

View cluster (34 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-60

PDB

Domain cluster: rep: triple_block_protein_3__YP_001429588__Potato_virus_P__329164__DFULL

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02495.23 best	TGBp3	61.4	6.90e-17	96.7%	86.4%

CATH (7)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5x6vF00	3.30.450.190	Alpha Beta › 2-Layer Sandwich › Beta-Lactamase ›	0.61	32.0	2.57e-01	70.0%	23.7%
2retA00	3.30.1300.30	Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like	0.58	40.0	3.51e-01	71.7%	100.0%
3bjoA00	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.57	45.0	3.79e-01	86.7%	66.0%
1go4A00	3.30.900.10	Alpha Beta › 2-Layer Sandwich › Cell Cycle, Spindle Assembly Checkpoint Protein; Chain A › HORMA domain	0.57	41.0	2.76e-01	75.0%	69.4%
4dveA00	1.10.1760.20	Mainly Alpha › Orthogonal Bundle › Arp2/3 complex 21 kDa subunit ARPC3 ›	0.56	38.0	2.78e-01	71.7%	42.9%
2chcC00	3.10.450.50	Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, ›	0.51	38.0	2.71e-01	78.3%	88.1%
6l2cB00	3.40.47.10	Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase	0.51	36.0	2.17e-01	75.0%	11.8%

ECOD (10)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3513803	377.1.1.92 ↗	few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › LUC7	0.73	41.0	3.75e-01	71.7%	42.5%
4593130	601.7.1.40 ↗	alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › Cas13a_C	0.69	47.0	2.91e-01	71.7%	15.8%
4978597	4177.1.1.0 ↗	alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like	0.68	51.0	3.60e-01	80.0%	28.1%
3743600	109.4.1.1297 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TIMELESS, PF27570	0.67	41.0	2.30e-01	83.3%	5.0%
4025349	3567.1.1.0 ↗	a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer	0.61	51.0	3.97e-01	98.3%	43.1%
3320244	53.1.1.4 ↗	beta duplicates or obligate multimers › Triple beta-spiral › Triple beta-spiral › Triple beta-spiral › XH	0.58	40.0	3.39e-01	73.3%	73.3%
3296120	3922.1.1.126 ↗	alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › XH	0.56	37.0	3.27e-01	70.0%	77.0%
3330811	101.1.1.339 ↗	alpha arrays › HTH › HTH › Three-helical HTH › XH	0.55	37.0	3.24e-01	70.0%	77.0%
3902667	12.5.1.2 ↗	beta sandwiches › Glycosyl hydrolase domain-like › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › GPS	0.51	35.0	2.54e-01	71.7%	29.0%
3679534	7512.1.1.0 ↗	a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase	0.51	40.0	2.49e-01	96.7%	56.0%