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truncated_gag-pro-pol

Euk-Vir

PreXMRV-1

truncated_gag-pro-pol__YP_004680223__PreXMRV-1__1038068

Identity

Accession:: YP_004680223 ↗
Protein ID:: truncated_gag-pro-pol
Kingdom:: euk

Quality

59.9 mean pLDDT

Taxonomy

Pararnavirae› Artverviricota› Revtraviricetes› Ortervirales› Retroviridae› Gammaretrovirus› PreXMRV-1

TaxID: 1038068

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 8-91

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01140.25 best	Gag_MA	171.6	6.20e-51	100.0%	74.3%

CATH (12)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1mn8D00	1.10.150.180	Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Gamma-retroviral matrix domain	0.91	87.0	8.21e-01	100.0%	86.6%
2erbA01	1.10.238.20	Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain	0.62	37.0	3.49e-01	100.0%	45.8%
4lixA03	1.10.600.10	Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase	0.58	47.0	3.55e-01	92.9%	80.5%
2wg7A00	1.20.90.10	Mainly Alpha › Up-down Bundle › Phospholipase A2 › Phospholipase A2 domain	0.56	49.0	4.34e-01	97.6%	90.9%
1su0B00	3.90.1010.10	Alpha Beta › Alpha-Beta Complex › Sufe protein. Chain: A ›	0.56	48.0	4.16e-01	98.8%	87.5%
2dfkC01	1.20.900.10	Mainly Alpha › Up-down Bundle › Dbl Homology Domain; Chain A › Dbl homology (DH) domain	0.55	44.0	3.42e-01	91.7%	61.3%
3mk7C02	1.10.760.10	Mainly Alpha › Orthogonal Bundle › Cytochrome Bc1 Complex; Chain D, domain 2 › Cytochrome c-like domain	0.54	41.0	3.76e-01	83.3%	74.6%
6ks6q01	1.10.560.10	Mainly Alpha › Orthogonal Bundle › GROEL; domain 1 › GroEL-like equatorial domain	0.54	45.0	3.26e-01	97.6%	35.2%
3k3uA00	1.10.490.10	Mainly Alpha › Orthogonal Bundle › Globin-like › Globins	0.51	39.0	3.39e-01	83.3%	92.0%
2yskA00	1.10.490.110	Mainly Alpha › Orthogonal Bundle › Globin-like › Uncharacterized conserved protein DUF2267	0.51	44.0	3.73e-01	97.6%	91.0%
5ulcX00	1.20.920.10	Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like	0.51	44.0	3.97e-01	100.0%	77.9%
3u64A00	1.25.40.920	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › TRAP transporter T-component	0.51	42.0	3.02e-01	94.0%	78.6%

ECOD (6)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3257	612.1.1.2 ↗	alpha arrays › Retroviral matrix proteins › Retroviral matrix proteins › Retroviral matrix proteins › Gag_MA	0.89	85.0	7.75e-01	100.0%	80.0%
1291622	304.41.1.1 ↗	a+b two layers › Alpha-beta plaits › Glutamyl tRNA-reductase catalytic, N-terminal domain › Glutamyl tRNA-reductase catalytic, N-terminal domain › GlutR_N	0.64	44.0	3.52e-01	70.2%	93.1%
4850960	109.3.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat	0.63	49.0	3.98e-01	83.3%	64.1%
3973441	606.1.1.0 ↗	alpha complex topology › Nop N-terminal domain › Nop N-terminal domain › Nop N-terminal domain	0.54	39.0	3.91e-01	97.6%	72.2%
3387635	148.1.3.26 ↗	alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_9	0.53	40.0	3.89e-01	82.1%	95.8%
5052492	5050.1.1.0 ↗	alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter	0.53	40.0	3.20e-01	84.5%	93.8%

D2 medium residues 216-310

PDB