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trypsin-like_serine_protease
Euk-VirPandoravirus_inopinatum
trypsin-like_serine_protease__YP_009120451__Pandoravirus_inopinatum__1605721
Identity
- Accession:
- YP_009120451 ↗
- Protein ID:
- trypsin-like_serine_protease
- Kingdom:
- euk
Quality
71.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 24-56_92-153
Domain cluster:
representative
CATH (26)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 7co7D03 | 2.30.42.10 | Mainly Beta › Roll › Pdz3 Domain › PDZ domain | 0.80 | 56.0 | 5.71e-01 | 100.0% | 73.4% |
| 2l97A01 | 2.30.42.10 | Mainly Beta › Roll › Pdz3 Domain › PDZ domain | 0.78 | 54.0 | 5.39e-01 | 98.9% | 68.7% |
| 3rleA01 | 2.30.42.10 | Mainly Beta › Roll › Pdz3 Domain › PDZ domain | 0.76 | 61.0 | 5.92e-01 | 100.0% | 77.9% |
| 4c2dA01 | 2.30.42.10 | Mainly Beta › Roll › Pdz3 Domain › PDZ domain | 0.75 | 56.0 | 5.68e-01 | 100.0% | 79.6% |
| 2kjkA00 | 2.30.42.10 | Mainly Beta › Roll › Pdz3 Domain › PDZ domain | 0.74 | 58.0 | 5.69e-01 | 100.0% | 78.0% |
| 3a5zB01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.73 | 40.0 | 4.82e-01 | 98.9% | 81.0% |
| 4edjA02 | 2.30.42.10 | Mainly Beta › Roll › Pdz3 Domain › PDZ domain | 0.72 | 55.0 | 5.52e-01 | 100.0% | 79.6% |
| 3oyyA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.71 | 40.0 | 4.66e-01 | 100.0% | 78.8% |
| 1uebA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.70 | 39.0 | 4.59e-01 | 98.9% | 81.0% |
| 6s8zA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.70 | 39.0 | 4.71e-01 | 100.0% | 83.9% |
| 2iayA00 | 3.30.1820.10 | Alpha Beta › 2-Layer Sandwich › Lp2179-like fold › Lp2179-like | 0.62 | 33.0 | 3.11e-01 | 97.9% | 41.2% |
| 1iz6A01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.60 | 40.0 | 4.59e-01 | 95.8% | 92.8% |
| 3cpfA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.60 | 38.0 | 4.41e-01 | 93.7% | 92.3% |
| 1hczA02 | 2.40.50.100 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | 0.59 | 36.0 | 4.49e-01 | 90.5% | 100.0% |
| 3kxtA00 | 2.30.30.610 | Mainly Beta › Roll › SH3 type barrels. › Chromatin protein Cren7 | 0.58 | 35.0 | 4.22e-01 | 98.9% | 98.2% |
| 2qkdA01 | 2.20.25.420 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ZPR1, zinc finger domain | 0.57 | 30.0 | 3.83e-01 | 94.7% | 97.9% |
| 4m0wA03 | 2.60.120.1680 | Mainly Beta › Sandwich › Jelly Rolls › | 0.56 | 41.0 | 3.64e-01 | 75.8% | 73.0% |
| 2qkdA03 | 2.20.25.420 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ZPR1, zinc finger domain | 0.55 | 30.0 | 3.61e-01 | 95.8% | 92.2% |
| 3o4oC02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 40.0 | 3.94e-01 | 86.3% | 72.0% |
| 1s2kA00 | 2.60.120.700 | Mainly Beta › Sandwich › Jelly Rolls › Peptidase G1 | 0.53 | 42.0 | 3.40e-01 | 87.4% | 96.0% |
| 1eo9A00 | 2.60.130.10 | Mainly Beta › Sandwich › Protocatechuate 3,4-Dioxygenase, subunit A › Aromatic compound dioxygenase | 0.52 | 46.0 | 3.65e-01 | 100.0% | 83.2% |
| 1n9pA00 | 2.60.40.1400 | Mainly Beta › Sandwich › Immunoglobulin-like › G protein-activated inward rectifier potassium channel 1 | 0.52 | 45.0 | 3.63e-01 | 98.9% | 82.7% |
| 2wliA02 | 2.60.40.1400 | Mainly Beta › Sandwich › Immunoglobulin-like › G protein-activated inward rectifier potassium channel 1 | 0.51 | 43.0 | 3.70e-01 | 95.8% | 76.4% |
| 2b39A03 | 2.60.40.1940 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.51 | 41.0 | 3.80e-01 | 88.4% | 89.6% |
| 1qwdB00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.51 | 42.0 | 3.58e-01 | 92.6% | 74.7% |
| 5hccB03 | 2.60.40.1940 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.50 | 41.0 | 3.81e-01 | 88.4% | 97.5% |
ECOD (22)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4030031 | 7.1.1.0 ↗ | beta barrels › PDZ domain › PDZ domain › PDZ domain | 0.84 | 62.0 | 5.92e-01 | 100.0% | 66.4% |
| 1945520 | 7.1.1.4 ↗ | beta barrels › PDZ domain › PDZ domain › PDZ domain › GRASP55_65 | 0.83 | 60.0 | 6.49e-01 | 95.8% | 88.7% |
| 3445449 | 7.1.1.0 ↗ | beta barrels › PDZ domain › PDZ domain › PDZ domain | 0.80 | 58.0 | 5.08e-01 | 100.0% | 52.6% |
| 3744351 | 7.1.1.12 ↗ | beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ_1 | 0.78 | 56.0 | 5.24e-01 | 100.0% | 61.7% |
| 3626118 | 7.1.1.4 ↗ | beta barrels › PDZ domain › PDZ domain › PDZ domain › GRASP55_65 | 0.77 | 61.0 | 5.65e-01 | 100.0% | 66.7% |
| 3221233 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.76 | 35.0 | 4.90e-01 | 93.7% | 93.3% |
| 4587696 | 2.4.1.0 ↗ | beta barrels › OB-fold › MOP-like › MOP-like | 0.74 | 39.0 | 3.86e-01 | 90.5% | 50.0% |
| 4515154 | 2.4.1.12 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE_3+CysA_C_terminal | 0.70 | 38.0 | 3.55e-01 | 90.5% | 44.3% |
| 5024676 | 7.1.1.0 ↗ | beta barrels › PDZ domain › PDZ domain › PDZ domain | 0.66 | 61.0 | 5.99e-01 | 100.0% | 96.0% |
| 3663352 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.63 | 36.0 | 4.33e-01 | 73.7% | 88.3% |
| 5032735 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.63 | 41.0 | 4.05e-01 | 100.0% | 63.0% |
| 2475219 | 7.1.1.0 ↗ | beta barrels › PDZ domain › PDZ domain › PDZ domain | 0.62 | 47.0 | 4.84e-01 | 95.8% | 82.6% |
| 3699292 | 2004.1.1.198 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 | 0.59 | 43.0 | 3.50e-01 | 77.9% | 84.3% |
| 3570978 | 4.2.1.3 ↗ | beta barrels › SH3 › SAND › SAND › RAMA | 0.57 | 46.0 | 4.70e-01 | 97.9% | 92.2% |
| 3641871 | 1.1.5.8 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx | 0.56 | 45.0 | 3.78e-01 | 87.4% | 56.9% |
| 3737835 | 241.15.1.0 ↗ | a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain | 0.55 | 36.0 | 3.54e-01 | 90.5% | 61.0% |
| 3476615 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.55 | 39.0 | 4.25e-01 | 98.9% | 87.5% |
| 4981433 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.52 | 43.0 | 4.27e-01 | 94.7% | 87.0% |
| 3936802 | 10.1.1.90 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › PF29322 | 0.51 | 39.0 | 3.44e-01 | 84.2% | 88.0% |
| 3725581 | 10.1.1.8 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › SPRY | 0.51 | 38.0 | 3.08e-01 | 83.2% | 94.9% |
| 3411195 | 11.1.1.538 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CHRD | 0.51 | 42.0 | 3.90e-01 | 95.8% | 95.4% |
| 3256584 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.50 | 36.0 | 3.93e-01 | 91.6% | 91.3% |
D2
high
residues 170-299
Domain cluster:
rep: Serine_protease,_DegP_HtrA,_do-like__YP_009352826__Kaumoebavirus_Viruses.__X__D302-418
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00595.30 best | PDZ | 23.6 | 7.80e-05 | 58.5% | 53.1% |
| PF17820.8 | PDZ_6 | 32.3 | 9.20e-08 | 40.0% | 70.4% |