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tubule_protein

Euk-Vir

Wad_Medani_virus

tubule_protein__YP_009158886__Wad_Medani_virus__40067

Identity

Accession:: YP_009158886 ↗
Protein ID:: tubule_protein
Kingdom:: euk

Quality

84.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-96

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01718.24 best	Orbi_NS1	95.4	3.90e-27	100.0%	17.9%

CATH (9)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5t3wA00	1.20.120.1160	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) ›	0.61	49.0	4.38e-01	87.5%	67.9%
5dvwA00	1.20.120.1160	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) ›	0.59	48.0	4.38e-01	89.6%	71.2%
3t46A00	1.20.1270.10	Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 ›	0.59	43.0	4.71e-01	84.4%	97.3%
4lqkA00	1.10.437.20	Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › dsDNA poxvirus	0.55	42.0	3.85e-01	83.3%	89.4%
3pwxA01	1.20.1330.10	Mainly Alpha › Up-down Bundle › f41 fragment of flagellin, N-terminal domain › f41 fragment of flagellin, N-terminal domain	0.54	42.0	3.47e-01	85.4%	56.0%
1r8iA00	1.20.58.430	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Type IV secretion system, VirB5-domain	0.53	42.0	3.36e-01	82.3%	87.2%
4ri6A02	1.20.1050.10	Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 ›	0.53	36.0	3.41e-01	70.8%	86.6%
3kwlA02	1.10.1060.20	Mainly Alpha › Orthogonal Bundle › Fumarate Reductase Iron-sulfur Protein; Chain B, domain 2 ›	0.52	33.0	3.19e-01	74.0%	53.1%
2vvwA00	1.10.437.20	Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › dsDNA poxvirus	0.52	40.0	3.55e-01	84.4%	88.0%

ECOD (7)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5000283	2006.1.2.0 ↗	a/b three-layered sandwiches › HAD domain-like › HAD domain-related › DHH phosphoesterases	0.63	48.0	3.66e-01	81.2%	89.8%
3281932	628.1.1.1 ↗	alpha bundles › Fatty acid responsive transcription factor FadR, C-terminal domain › Fatty acid responsive transcription factor FadR, C-terminal domain › Fatty acid responsive transcription factor FadR, C-terminal domain › FCD	0.52	42.0	3.63e-01	85.4%	77.2%
4956012	632.11.1.0 ↗	alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like	0.51	41.0	4.05e-01	87.5%	81.0%
4683248	5086.1.1.66 ↗	alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › GNVR	0.51	35.0	3.16e-01	70.8%	69.3%
3173246	143.1.1.0 ↗	alpha arrays › PABP domain-like › PABC(PABP) domain › PABC(PABP) domain	0.51	36.0	3.82e-01	84.4%	85.7%
3946576	5086.1.1.66 ↗	alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › GNVR	0.51	35.0	3.17e-01	70.8%	75.6%
4023387	632.7.1.0 ↗	alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain	0.51	44.0	4.37e-01	96.9%	94.0%

D2 high residues 135-258

PDB

Domain cluster: rep: tubule_protein__YP_009163941__Fengkai_orbivirus__1692107__D132-252

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01718.24 best	Orbi_NS1	108.8	3.40e-31	100.0%	24.6%

ECOD (3)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3713450	327.5.1.5 ↗	a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins › AMP-binding_C_3	0.57	41.0	4.02e-01	75.0%	82.2%
3205500	316.1.1.0 ↗	a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase	0.54	43.0	3.54e-01	85.5%	86.7%
3285307	2003.1.2.15 ↗	a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3	0.51	40.0	2.89e-01	85.5%	91.1%

D3 medium residues 97-124_343-513

PDB

Domain cluster: rep: tubule_protein__YP_009163941__Fengkai_orbivirus__1692107__D97-131_392-554

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01718.24 best	Orbi_NS1	196.0	1.30e-57	91.0%	32.6%

CATH (10)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2q00B00	1.20.120.330	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2	0.56	26.0	3.19e-01	72.4%	66.4%
3m6jA01	1.20.1260.40	Mainly Alpha › Up-down Bundle › Ferritin ›	0.56	29.0	3.67e-01	99.5%	82.9%
2rg8A00	1.25.40.180	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat ›	0.55	34.0	3.86e-01	76.9%	79.3%
3a11B01	1.20.120.420	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › translation initiation factor eif-2b, domain 1	0.55	35.0	4.30e-01	70.9%	100.0%
3thxB04	1.10.1420.10	Mainly Alpha › Orthogonal Bundle › MutS, DNA mismatch repair protein; Chain A, domain 3 ›	0.54	27.0	3.32e-01	100.0%	73.4%
1ewqA04	1.10.1420.10	Mainly Alpha › Orthogonal Bundle › MutS, DNA mismatch repair protein; Chain A, domain 3 ›	0.53	27.0	3.28e-01	100.0%	72.1%
2w02B01	1.10.150.640	Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › AcsD, thumb domain, helical bundle	0.53	21.0	3.38e-01	70.4%	97.3%
3nqwA00	1.10.3210.10	Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432	0.51	36.0	3.84e-01	77.4%	80.3%
1q6aA00	1.10.1240.30	Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › KaiA/RbsU domain	0.51	27.0	3.53e-01	79.4%	92.5%
2k0nA00	1.10.246.20	Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › Coactivator CBP, KIX domain	0.50	20.0	2.97e-01	74.4%	82.4%

ECOD (7)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5028077	601.7.1.0 ↗	alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain	0.57	25.0	3.35e-01	71.4%	74.5%
4119941	604.12.1.51 ↗	alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › 5TM-5TMR_LYT	0.54	38.0	3.87e-01	70.4%	78.4%
3564576	106.1.1.8 ↗	alpha arrays › Globin-like › Globin-like › Globin-like › HisK-N-like	0.54	31.0	3.53e-01	79.4%	74.0%
3236920	106.1.1.8 ↗	alpha arrays › Globin-like › Globin-like › Globin-like › HisK-N-like	0.52	31.0	3.47e-01	77.9%	74.7%
3251841	601.1.2.0 ↗	alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608)	0.52	31.0	3.69e-01	100.0%	86.7%
3878144	601.1.2.2 ↗	alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) › I_LWEQ	0.51	32.0	3.88e-01	100.0%	91.9%
4468935	601.1.2.0 ↗	alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608)	0.51	30.0	3.63e-01	98.5%	87.7%

D4 medium residues 259-342

PDB

Domain cluster: rep: Nsp1__YP_008719915__Mobuck_virus__1408137__D271-338

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01718.24 best	Orbi_NS1	59.0	4.10e-16	100.0%	16.2%