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tubule_protein

Euk-Vir

Chobar_Gorge_virus

tubule_protein__YP_009158905__Chobar_Gorge_virus__1679172

Identity

Accession:: YP_009158905 ↗
Protein ID:: tubule_protein
Kingdom:: euk

Quality

76.2 mean pLDDT

Cluster

View cluster (12 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-96

PDB

Domain cluster: rep: tubule_protein__YP_009158886__Wad_Medani_virus__40067__D1-96

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01718.24 best	Orbi_NS1	58.9	4.50e-16	100.0%	17.8%

CATH (12)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3t46A00	1.20.1270.10	Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 ›	0.61	42.0	4.69e-01	82.3%	92.0%
4fm3A00	1.20.1270.390	Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 ›	0.58	41.0	4.18e-01	84.4%	75.8%
1au7A01	1.10.260.40	Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains	0.57	40.0	4.52e-01	77.1%	98.6%
2qffA00	1.20.1270.10	Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 ›	0.57	40.0	4.41e-01	83.3%	94.6%
4irlB02	1.10.533.10	Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas	0.57	42.0	4.32e-01	79.2%	96.8%
1sj7C00	1.20.1420.10	Mainly Alpha › Up-down Bundle › A middle domain of Talin 1 › Talin, central domain	0.53	44.0	3.69e-01	90.6%	97.6%
3sk9A00	1.10.3210.30	Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 ›	0.53	37.0	2.86e-01	74.0%	40.0%
5dqqA02	1.10.287.70	Mainly Alpha › Orthogonal Bundle › Helix Hairpins ›	0.52	36.0	3.28e-01	79.2%	51.5%
1br0A00	1.20.58.70	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.52	36.0	3.34e-01	70.8%	71.7%
3oqlC00	1.20.910.10	Mainly Alpha › Up-down Bundle › Heme Oxygenase; Chain A › Heme oxygenase-like	0.52	43.0	3.33e-01	95.8%	95.9%
2lmgA00	1.20.1270.10	Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 ›	0.52	37.0	4.15e-01	84.4%	98.6%
1egdA03	1.20.140.10	Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3	0.50	41.0	3.67e-01	90.6%	78.0%

ECOD (12)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4281814	7515.1.1.19 ↗	a/b three-layered sandwiches › Alkaline phosphatase-like › Alkaline phosphatase-like › Alkaline phosphatase-like › Sulfatase, Phosphodiest	0.58	47.0	3.01e-01	85.4%	97.5%
4194678	632.7.1.0 ↗	alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain	0.57	41.0	4.47e-01	83.3%	91.3%
3286065	632.15.1.0 ↗	alpha bundles › immunoglobulin/albumin-binding domain-like › Staphylococcal complement inhibitor (SCIN) › Staphylococcal complement inhibitor (SCIN)	0.56	38.0	4.26e-01	82.3%	95.7%
4954909	632.11.1.0 ↗	alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like	0.56	40.0	4.23e-01	85.4%	84.7%
4016849	633.4.1.7 ↗	alpha bundles › Bromodomain-like › Plant invertase/pectin methylesterase inhibitor › Plant invertase/pectin methylesterase inhibitor › TMD0_ABC	0.56	39.0	3.12e-01	71.9%	69.2%
4927173	632.11.1.0 ↗	alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like	0.55	39.0	4.10e-01	82.3%	82.4%
3880261	5000.3.1.0 ↗	alpha arrays › Toxins' membrane translocation domains › Bcl-2 inhibitors of programmed cell death › Bcl-2 inhibitors of programmed cell death	0.54	48.0	3.84e-01	99.0%	93.7%
5034435	632.11.1.0 ↗	alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like	0.54	38.0	4.12e-01	81.2%	90.0%
4994150	632.18.1.0 ↗	alpha bundles › immunoglobulin/albumin-binding domain-like › hypothetical protein PA2901 › hypothetical protein PA2901	0.53	40.0	4.11e-01	82.3%	85.3%
4023529	601.14.1.1 ↗	alpha bundles › Four-helical up-and-down bundle › Hemerythrin › Hemerythrin › Hemerythrin	0.53	46.0	3.48e-01	100.0%	86.3%
4961510	3646.1.1.1 ↗	alpha complex topology › T-component of energy-coupling factor (ECF) transporters › T-component of energy-coupling factor (ECF) transporters › T-component of energy-coupling factor (ECF) transporters › CbiQ	0.52	37.0	2.72e-01	74.0%	49.2%
3409850	192.29.1.24 ↗	alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › TMEM237	0.51	44.0	3.65e-01	96.9%	87.4%

D2 medium residues 97-117_443-518

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01718.24 best	Orbi_NS1	27.5	1.50e-06	89.7%	11.6%

CATH (21)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1vq8V00	1.10.287.310	Mainly Alpha › Orthogonal Bundle › Helix Hairpins ›	0.79	41.0	4.99e-01	97.9%	76.9%
1sumB01	1.20.58.220	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2	0.77	36.0	3.48e-01	99.0%	40.2%
3ehfB01	6.10.250.2870	Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces ›	0.72	42.0	4.14e-01	97.9%	54.8%
1y4cA03	1.20.120.660	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › IL-4 antagonist (De novo design) like domain	0.66	40.0	3.77e-01	99.0%	51.3%
2oexA01	1.20.120.560	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › alix/aip1 in complex with the ypdl late domain	0.61	38.0	3.37e-01	99.0%	42.0%
2yksA02	1.20.58.390	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Neurotransmitter-gated ion-channel transmembrane domain	0.60	36.0	3.44e-01	99.0%	48.7%
4h33A00	1.10.287.70	Mainly Alpha › Orthogonal Bundle › Helix Hairpins ›	0.60	45.0	4.67e-01	100.0%	85.7%
2xheA03	3.90.830.10	Alpha Beta › Alpha-Beta Complex › Syntaxin Binding Protein 1; Chain A, domain 2 › Sec1/Munc18 (SM) protein, domain 3a	0.58	40.0	3.77e-01	94.8%	57.9%
3td7A02	1.20.120.1250	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Sulfhydryl oxidase R596, ORFan domain	0.56	39.0	3.48e-01	71.1%	84.6%
1rxqD00	1.20.120.450	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain	0.55	41.0	3.41e-01	78.4%	90.5%
2hsbA00	1.20.120.330	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2	0.53	39.0	3.61e-01	78.4%	85.7%
2ip6A00	1.20.1440.140	Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) ›	0.53	43.0	4.55e-01	91.8%	97.7%
1fs0G02	1.10.287.80	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ATP synthase, gamma subunit, helix hairpin domain	0.53	39.0	4.11e-01	100.0%	85.4%
7zxkC01	1.20.1250.10	Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; ›	0.53	48.0	4.15e-01	100.0%	76.7%
8d7hD01	1.20.1250.10	Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; ›	0.53	48.0	3.95e-01	100.0%	68.2%
3jcmN01	3.40.50.300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases	0.52	44.0	3.32e-01	91.8%	63.4%
4wpcA00	1.20.1270.60	Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain	0.51	43.0	3.00e-01	99.0%	30.4%
3kyiA00	1.20.120.160	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain	0.51	37.0	3.36e-01	75.3%	64.1%
3fm9A02	1.10.150.240	Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2	0.51	35.0	3.90e-01	95.9%	89.7%
3m6jA01	1.20.1260.40	Mainly Alpha › Up-down Bundle › Ferritin ›	0.51	44.0	4.13e-01	100.0%	78.6%
3m0fB02	1.20.1050.10	Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 ›	0.51	43.0	3.97e-01	99.0%	70.7%

ECOD (24)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3706526	3755.3.1.0 ↗	alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin	0.74	43.0	3.66e-01	99.0%	38.0%
4961755	5069.1.1.26 ↗	alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes › NrfD	0.73	40.0	3.09e-01	97.9%	25.4%
3290723	601.1.1.85 ↗	alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin › PaaX_C	0.71	40.0	3.97e-01	99.0%	52.4%
3783600	3922.1.1.0 ↗	alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3	0.68	37.0	3.61e-01	99.0%	47.3%
5010063	604.24.1.1 ↗	alpha bundles › Spectrin repeat-like › Helical bundle domain in putative transcriptional regulator Jann_0659-related proteins › Helical bundle domain in putative transcriptional regulator Jann_0659-related proteins › PaaX_C	0.65	31.0	3.16e-01	99.0%	43.0%
3461725	592.2.1.2 ↗	alpha arrays › PWI domain-like › YugE-like › YugE-like › WGG	0.62	42.0	3.99e-01	71.1%	97.5%
5051710	601.7.1.2 ↗	alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › HEPN	0.58	43.0	3.61e-01	78.4%	78.2%
3998525	196.1.1.1 ↗	alpha bundles › Regulator of G-protein signaling, RGS › Regulator of G-protein signaling, RGS › Regulator of G-protein signaling, RGS › RGS	0.56	42.0	3.38e-01	78.4%	46.1%
3283630	601.7.1.18 ↗	alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › HEPN_SAV_6107	0.56	41.0	3.99e-01	77.3%	92.7%
5002845	192.8.1.0 ↗	alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain	0.56	40.0	3.77e-01	99.0%	60.8%
3740332	1128.1.1.0 ↗	alpha bundles › LYR protein › LYR protein › LYR protein	0.56	41.0	4.55e-01	77.3%	97.5%
3248081	601.7.1.0 ↗	alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain	0.55	40.0	3.76e-01	75.3%	83.3%
5069745	606.1.1.1 ↗	alpha complex topology › Nop N-terminal domain › Nop N-terminal domain › Nop N-terminal domain › Nop	0.54	47.0	4.58e-01	99.0%	83.6%
3319492	3923.1.1.1 ↗	alpha bundles › Mitotic chromosome determinant-related protein N-terminal domain › Mitotic chromosome determinant-related protein N-terminal domain › Mitotic chromosome determinant-related protein N-terminal domain › Rad21_Rec8_N	0.54	35.0	3.90e-01	91.8%	81.2%
5060007	5059.1.1.1 ↗	alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA	0.53	47.0	4.23e-01	97.9%	73.3%
4944677	604.3.1.0 ↗	alpha bundles › Spectrin repeat-like › BAG domain › BAG domain	0.53	38.0	3.76e-01	74.2%	96.0%
5065130	633.12.1.0 ↗	alpha bundles › Bromodomain-like › Ta0600-like › Ta0600-like	0.51	41.0	4.33e-01	89.7%	97.6%
3347740	3560.1.1.0 ↗	a+b complex topology › Mediator of RNA polymerase II transcription subunit 8 › Mediator of RNA polymerase II transcription subunit 8 › Mediator of RNA polymerase II transcription subunit 8	0.51	45.0	4.09e-01	96.9%	98.5%
4857877	5001.1.1.1 ↗	alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1	0.51	39.0	3.16e-01	100.0%	43.8%
3590073	605.1.1.0 ↗	alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase	0.51	34.0	3.70e-01	99.0%	78.8%
5029495	3745.1.1.1 ↗	alpha bundles › Sodium/Calcium exchanger › Sodium/Calcium exchanger › Sodium/Calcium exchanger › Na_Ca_ex	0.51	46.0	3.25e-01	100.0%	65.2%
3645237	601.14.1.0 ↗	alpha bundles › Four-helical up-and-down bundle › Hemerythrin › Hemerythrin	0.51	44.0	3.97e-01	96.9%	97.0%
3819102	4207.1.1.0 ↗	alpha duplicates or obligate multimers › Mediator hinge subcomplex-like › Mediator hinge subcomplex-like › RNA polymerase II holoenzyme component SRB7 (MED21)	0.51	44.0	3.64e-01	96.9%	75.4%
3940580	604.6.1.14 ↗	alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain › RasGAP_C	0.51	37.0	3.47e-01	75.3%	83.5%

D3 medium residues 138-265

PDB

Domain cluster: rep: tubule_protein__YP_009163941__Fengkai_orbivirus__1692107__D132-252

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01718.24 best	Orbi_NS1	71.5	6.60e-20	100.0%	24.8%

CATH (4)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3og2A03	2.60.390.10	Mainly Beta › Sandwich › beta-galactosidase, domain 3 › Beta-galactosidase, domain 3	0.67	27.0	3.27e-01	72.7%	53.9%
2pw9C02	3.10.20.10	Alpha Beta › Roll › Ubiquitin-like (UB roll) ›	0.62	21.0	3.09e-01	70.3%	62.1%
4g1iA03	3.30.70.1770	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits ›	0.57	24.0	3.25e-01	87.5%	72.5%
3zwbA01	3.90.226.10	Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1	0.51	40.0	3.15e-01	82.0%	90.7%

ECOD (5)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4994596	327.13.1.0 ↗	a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif I in type III secretion system › Ring-building motif I in type III secretion system	0.56	33.0	3.79e-01	78.1%	79.8%
1824189	327.6.1.3 ↗	a+b two layers › Alpha-lytic protease prodomain-like › Fe-S cluster assembly (FSCA) domain-like › Fe-S cluster assembly (FSCA) domain-like › Germane	0.53	35.0	3.32e-01	81.2%	56.4%
3917573	327.5.1.2 ↗	a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins › AMP-binding_C	0.53	36.0	3.87e-01	74.2%	81.8%
4960251	2008.1.1.16 ↗	a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Mrr_cat	0.52	35.0	3.55e-01	70.3%	91.7%
4275412	327.10.1.2 ↗	a+b two layers › Alpha-lytic protease prodomain-like › Ribosome-binding factor A (RbfA)-related › Ribosome-binding factor A (RbfA)-related › RBFA	0.51	33.0	3.54e-01	82.0%	75.5%

D4 medium residues 266-343

PDB

Domain cluster: rep: Nsp1__YP_008719915__Mobuck_virus__1408137__D271-338

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01718.24 best	Orbi_NS1	39.5	3.40e-10	100.0%	14.9%

ECOD (1)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3884336	4957.1.1.0 ↗	a+b complex topology › helical domain in yeast RNA-polymerases › third helical domain in yeast RNA-polymerase II beta-prime subunit › third helical domain in yeast RNA-polymerase II beta-prime subunit	0.55	43.0	3.61e-01	89.7%	82.7%

D5 medium residues 344-442

PDB

Domain cluster: rep: hydrophobic_tubular_protein_NS1__YP_008719922__Changuinola_virus__40052__D348-415

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01718.24 best	Orbi_NS1	54.3	1.10e-14	100.0%	18.9%