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tubule_protein

Euk-Vir

Fengkai_orbivirus

tubule_protein__YP_009163941__Fengkai_orbivirus__1692107

Identity

Accession:
YP_009163941 ↗
Protein ID:
tubule_protein
Kingdom:
euk

Quality

86.8 mean pLDDT

Cluster

View cluster (12 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-96
PDB
Domain cluster: rep: tubule_protein__YP_009158886__Wad_Medani_virus__40067__D1-96
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF01718.24 best Orbi_NS1 102.5 2.60e-29 100.0% 18.3%
D2 medium residues 97-131_392-554
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF01718.24 best Orbi_NS1 149.7 1.30e-43 74.8% 24.1%
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7jgdA01 1.20.1310.20 Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Duffy-antigen binding domain 0.69 29.0 3.57e-01 100.0% 58.6%
4hr1A00 1.20.1270.410 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.63 26.0 3.35e-01 93.9% 64.4%
1hciA03 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.60 28.0 3.57e-01 96.0% 72.5%
2ozbB01 1.10.287.4070 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.59 34.0 4.10e-01 87.4% 84.7%
4v3iA00 1.25.40.590 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Type IV / VI secretion system, DotU 0.57 32.0 3.56e-01 72.2% 68.0%
2hsbA00 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.55 31.0 3.75e-01 72.7% 83.3%
3mvuA00 1.20.910.10 Mainly Alpha › Up-down Bundle › Heme Oxygenase; Chain A › Heme oxygenase-like 0.55 35.0 3.40e-01 85.4% 55.4%
1hw1A02 1.20.120.530 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › GntR ligand-binding domain-like 0.55 34.0 3.83e-01 88.4% 79.5%
2hs5A02 1.20.120.530 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › GntR ligand-binding domain-like 0.55 35.0 4.02e-01 88.9% 87.9%
3di2A00 1.20.1250.50 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.55 32.0 4.05e-01 93.9% 97.4%
2l6hA00 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.52 31.0 3.47e-01 71.7% 73.4%
2etdA00 1.20.1440.20 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › LemA-like domain 0.52 34.0 3.90e-01 93.9% 90.1%
2zcxA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.51 40.0 3.98e-01 82.3% 93.2%
1sumB02 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.50 29.0 3.66e-01 73.2% 94.1%
ECOD (8)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5054769 601.7.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain 0.63 24.0 3.21e-01 84.8% 60.9%
4928468 633.12.1.1 ↗ alpha bundles › Bromodomain-like › Ta0600-like › Ta0600-like › UPF0147 0.58 26.0 3.75e-01 85.9% 91.0%
3870735 601.25.1.5 ↗ alpha bundles › Four-helical up-and-down bundle › TrmE connector domain › TrmE connector domain › OPA1_C 0.57 32.0 4.03e-01 86.4% 87.2%
5031744 601.7.1.2 ↗ alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › HEPN 0.55 31.0 3.78e-01 71.7% 84.8%
4010964 192.29.1.102 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › Fung_rhodopsin 0.55 27.0 3.37e-01 77.3% 73.6%
3980111 3281.1.1.2 ↗ alpha complex topology › Sodium/proton antiporter subunits-like › Sodium/proton antiporter subunits-like › NADH-quinone oxidoreductase subunit L (NuoL)-related › Proton_antipo_M,Proton_antipo_N 0.52 41.0 2.91e-01 82.3% 59.8%
3191972 109.4.1.356 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fungal_trans 0.50 41.0 3.14e-01 87.4% 92.0%
4381446 3896.1.1.0 ↗ alpha duplicates or obligate multimers › Intramembrane CDP-DAG synthetase-related › Intramembrane CDP-DAG synthetase-related › Intramembrane CDP-DAG synthetase 0.50 36.0 3.39e-01 71.7% 91.7%
D3 medium residues 132-252
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF01718.24 best Orbi_NS1 96.3 2.10e-27 100.0% 22.1%
CATH (6)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2jmpA01 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.54 32.0 3.69e-01 71.9% 80.5%
2frnA01 3.30.300.110 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › Met-10+ protein-like domains 0.51 24.0 3.27e-01 80.2% 91.1%
1ny8A00 3.30.300.90 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › BolA-like 0.51 33.0 3.61e-01 81.0% 81.4%
3if5A02 3.30.750.24 Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › STAS domain 0.51 32.0 3.70e-01 92.6% 86.5%
3lulA02 3.20.10.10 Alpha Beta › Alpha-Beta Barrel › D-amino Acid Aminotransferase; Chain A, domain 2 › D-amino Acid Aminotransferase, subunit A, domain 2 0.51 36.0 3.30e-01 72.7% 78.1%
1a6jB00 3.40.930.10 Alpha Beta › 3-Layer(aba) Sandwich › Mannitol-specific EII; Chain A › Mannitol-specific EII; Chain A 0.51 44.0 4.06e-01 96.7% 91.7%
ECOD (12)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5053352 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.57 45.0 4.11e-01 84.3% 78.1%
4645759 286.1.1.4 ↗ a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Pro_racemase 0.56 41.0 3.57e-01 77.7% 79.5%
1117076 286.1.1.4 ↗ a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Pro_racemase 0.54 40.0 3.46e-01 78.5% 82.1%
4928951 327.7.1.2 ↗ a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like › FKBP26_C 0.53 27.0 3.46e-01 79.3% 82.9%
4947569 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.53 39.0 3.61e-01 76.0% 67.1%
5073133 2008.1.1.16 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Mrr_cat 0.53 40.0 3.73e-01 80.2% 71.3%
4510454 327.6.1.0 ↗ a+b two layers › Alpha-lytic protease prodomain-like › Fe-S cluster assembly (FSCA) domain-like › Fe-S cluster assembly (FSCA) domain-like 0.52 31.0 3.08e-01 78.5% 54.7%
4975459 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.51 40.0 3.69e-01 83.5% 76.1%
5076295 2008.1.1.107 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › NERD 0.51 38.0 3.70e-01 78.5% 77.8%
4979146 2008.1.1.107 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › NERD 0.51 38.0 3.49e-01 78.5% 67.5%
5079137 2008.1.1.16 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Mrr_cat 0.50 36.0 3.50e-01 76.0% 80.7%
3296010 2487.1.1.0 ↗ a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" 0.50 33.0 2.90e-01 87.6% 44.3%
D4 medium residues 253-333
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF01718.24 best Orbi_NS1 55.0 6.60e-15 100.0% 14.7%
CATH (6)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4gh9A01 1.10.8.950 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Filoviridae VP35, C-terminal inhibitory domain, helical subdomain 0.54 38.0 3.99e-01 72.8% 90.0%
4p63D00 3.40.910.10 Alpha Beta › 3-Layer(aba) Sandwich › Deoxyhypusine Synthase › Deoxyhypusine synthase 0.54 39.0 2.66e-01 77.8% 35.6%
3pl2A01 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.52 46.0 3.24e-01 100.0% 64.2%
7krzA02 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.52 37.0 3.66e-01 84.0% 71.4%
3h49B00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.52 46.0 3.13e-01 100.0% 42.8%
3purA01 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.52 35.0 3.65e-01 97.5% 77.0%
ECOD (10)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4621623 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.62 35.0 4.16e-01 70.4% 84.9%
3330188 376.1.3.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.59 35.0 3.87e-01 75.3% 73.8%
4433068 140.1.1.8 ↗ alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › tRNA-synt_1g,Anticodon_3 0.56 39.0 2.77e-01 82.7% 23.2%
3984466 2003.6.1.1 ↗ a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › PfkB 0.55 48.0 3.61e-01 100.0% 64.8%
5011376 2003.6.1.0 ↗ a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like 0.55 47.0 3.41e-01 100.0% 52.2%
4935857 2003.6.1.1 ↗ a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › PfkB 0.53 47.0 3.20e-01 100.0% 43.3%
3838699 3783.1.1.0 ↗ alpha bundles › Toxin RnlA C-terminal domain › Toxin RnlA C-terminal domain › Toxin RnlA C-terminal domain 0.53 41.0 3.25e-01 86.4% 96.8%
4580013 2003.6.1.1 ↗ a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › PfkB 0.52 45.0 3.11e-01 100.0% 43.1%
3874836 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.52 29.0 3.27e-01 71.6% 71.7%
4963765 108.4.1.5 ↗ alpha arrays › EF-hand › Hypothetical protein MTH865 › Hypothetical protein MTH865 › DUF5789 0.51 34.0 3.74e-01 90.1% 87.7%
D5 medium residues 334-391
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF01718.24 best Orbi_NS1 45.2 6.20e-12 100.0% 10.7%
ECOD (3)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3512101 246.1.1.1 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › Carbon-nitrogen hydrolase › Carbon-nitrogen hydrolase › CN_hydrolase 0.55 42.0 2.76e-01 86.2% 44.2%
3657609 7502.1.1.0 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS 0.55 38.0 3.07e-01 96.6% 35.0%
3966783 219.1.1.77 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › DUF3335 0.53 43.0 3.02e-01 94.8% 30.2%