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ubiquitin-conjugating_enzyme_E2_motif-containing_protein

Euk-Vir

Pandoravirus_inopinatum

ubiquitin-conjugating_enzyme_E2_motif-containing_protein__YP_009119376__Pandoravirus_inopinatum__1605721

Identity

Accession:
YP_009119376 ↗
Protein ID:
ubiquitin-conjugating_enzyme_E2_motif-containing_protein
Kingdom:
euk

Quality

77.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 31-138
PDB
Domain cluster: representative
CATH (36)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6jb7A01 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.85 70.0 6.03e-01 100.0% 58.6%
4r62A00 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.85 69.0 6.08e-01 100.0% 61.1%
2f4wB00 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.85 63.0 5.54e-01 100.0% 54.6%
1yf9A00 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.85 70.0 6.02e-01 100.0% 58.9%
1x23B00 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.84 68.0 5.95e-01 100.0% 59.9%
7ahfA01 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.83 66.0 5.92e-01 100.0% 61.6%
2y9mA00 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.82 69.0 5.86e-01 100.0% 57.2%
1j7dA00 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.82 68.0 6.13e-01 94.4% 66.4%
2h2yA01 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.82 65.0 6.33e-01 94.4% 76.7%
4ds2B00 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.82 68.0 5.90e-01 100.0% 60.3%
3zqsA01 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.80 49.0 5.39e-01 91.7% 75.0%
1kpsC00 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.80 69.0 6.00e-01 100.0% 62.8%
6nydC00 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.79 65.0 5.55e-01 100.0% 56.6%
1wzvA00 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.79 64.0 5.69e-01 100.0% 62.0%
1yrvA00 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.78 65.0 5.73e-01 100.0% 62.1%
3we5A00 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.78 67.0 6.03e-01 98.1% 68.8%
2ediA01 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.76 65.0 5.59e-01 100.0% 60.6%
5nl8A00 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.75 71.0 5.79e-01 100.0% 61.7%
3o2uA01 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.75 64.0 5.52e-01 100.0% 60.5%
1zuoB00 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.71 62.0 5.64e-01 95.4% 72.1%
3cegA00 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.70 64.0 4.61e-01 99.1% 36.3%
6nyoA00 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.68 61.0 5.06e-01 100.0% 56.4%
3obqA00 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.67 57.0 5.18e-01 94.4% 69.5%
6m9yA00 3.30.1300.40 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › 0.61 31.0 4.03e-01 80.6% 89.5%
4aw8A00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.60 39.0 3.30e-01 98.1% 38.2%
3c19A02 3.10.20.300 Alpha Beta › Roll › Ubiquitin-like (UB roll) › mk0293 like domain 0.59 40.0 4.56e-01 91.7% 96.2%
2konA00 3.30.160.350 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.57 39.0 4.39e-01 94.4% 95.1%
4fx9A03 3.30.390.30 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain 0.55 40.0 3.94e-01 93.5% 72.6%
1nhpA03 3.30.390.30 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain 0.54 39.0 3.92e-01 93.5% 72.6%
2cduA03 3.30.390.30 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain 0.53 41.0 4.05e-01 93.5% 77.0%
3cgbA03 3.30.390.30 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain 0.52 39.0 3.94e-01 88.9% 79.1%
3hrdC02 3.30.390.50 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › CO dehydrogenase flavoprotein, C-terminal domain 0.51 37.0 3.73e-01 93.5% 72.6%
3bnvD00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.51 38.0 3.42e-01 76.9% 71.3%
6qp9B01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 45.0 2.94e-01 97.2% 66.8%
6gp1A00 3.30.1300.40 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › 0.50 27.0 3.30e-01 91.7% 83.1%
2l9pA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.50 35.0 3.06e-01 77.8% 46.3%
ECOD (80)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3731060 216.1.1.1 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › UQ_con 0.87 70.0 5.71e-01 100.0% 49.2%
3418179 216.1.1.1 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › UQ_con 0.87 69.0 5.89e-01 100.0% 54.5%
3484239 216.1.1.0 ↗ a+b two layers › UBC-like › UBC-like › UBC-like 0.86 70.0 6.07e-01 100.0% 58.7%
4243918 216.1.1.1 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › UQ_con 0.86 70.0 6.07e-01 100.0% 58.7%
3644852 216.1.1.1 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › UQ_con 0.86 70.0 5.48e-01 100.0% 44.4%
3599870 216.1.1.0 ↗ a+b two layers › UBC-like › UBC-like › UBC-like 0.86 68.0 5.90e-01 100.0% 56.2%
3599363 216.1.1.0 ↗ a+b two layers › UBC-like › UBC-like › UBC-like 0.86 69.0 6.11e-01 100.0% 60.7%
3260284 216.1.1.1 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › UQ_con 0.86 70.0 5.70e-01 100.0% 50.0%
3662195 216.1.1.1 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › UQ_con 0.85 70.0 5.92e-01 100.0% 55.8%
4015824 216.1.1.0 ↗ a+b two layers › UBC-like › UBC-like › UBC-like 0.85 70.0 6.21e-01 100.0% 63.4%
4947279 216.1.1.0 ↗ a+b two layers › UBC-like › UBC-like › UBC-like 0.85 67.0 6.39e-01 100.0% 71.2%
1095007 216.1.1.1 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › UQ_con 0.85 70.0 5.98e-01 100.0% 57.5%
3212444 216.1.1.1 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › UQ_con 0.85 69.0 6.05e-01 100.0% 59.4%
3366478 216.1.1.1 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › UQ_con 0.85 69.0 6.14e-01 100.0% 62.2%
3711928 216.1.1.1 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › UQ_con 0.85 69.0 5.58e-01 100.0% 47.7%
3618852 216.1.1.1 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › UQ_con 0.85 68.0 5.94e-01 100.0% 58.7%
3649460 216.1.1.1 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › UQ_con 0.85 69.0 5.54e-01 100.0% 47.7%
3612938 216.1.1.1 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › UQ_con 0.85 70.0 6.06e-01 100.0% 60.0%
3594583 216.1.1.0 ↗ a+b two layers › UBC-like › UBC-like › UBC-like 0.84 69.0 6.07e-01 100.0% 61.3%
3412623 216.1.1.1 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › UQ_con 0.84 69.0 6.09e-01 100.0% 62.0%
3630875 216.1.1.1 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › UQ_con 0.83 69.0 5.83e-01 100.0% 56.0%
3598040 216.1.1.0 ↗ a+b two layers › UBC-like › UBC-like › UBC-like 0.83 68.0 6.16e-01 94.4% 66.7%
3265747 216.1.1.1 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › UQ_con 0.82 70.0 5.76e-01 100.0% 53.3%
3649302 216.1.1.1 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › UQ_con 0.82 68.0 5.83e-01 94.4% 58.1%
145118 216.1.1.1 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › UQ_con 0.82 69.0 5.86e-01 100.0% 57.2%
2701153 216.1.1.1 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › UQ_con 0.82 68.0 5.98e-01 94.4% 62.4%
4934320 216.1.1.1 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › UQ_con 0.82 67.0 6.16e-01 100.0% 68.1%
3335046 216.1.1.1 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › UQ_con 0.82 65.0 6.15e-01 95.4% 71.2%
3319647 216.1.1.1 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › UQ_con 0.82 67.0 5.95e-01 94.4% 62.0%
3601323 216.1.1.0 ↗ a+b two layers › UBC-like › UBC-like › UBC-like 0.82 69.0 5.98e-01 100.0% 60.6%
3608314 216.1.1.1 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › UQ_con 0.81 66.0 5.42e-01 100.0% 49.7%
3644842 216.1.1.1 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › UQ_con 0.81 70.0 5.91e-01 100.0% 58.8%
4030478 216.1.1.1 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › UQ_con 0.81 66.0 5.89e-01 100.0% 63.4%
3759054 216.1.1.1 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › UQ_con 0.80 67.0 5.32e-01 100.0% 46.3%
3737478 216.1.1.1 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › UQ_con 0.80 70.0 6.05e-01 100.0% 63.2%
4026098 216.1.1.1 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › UQ_con 0.80 66.0 5.86e-01 98.1% 62.7%
3600349 216.1.1.0 ↗ a+b two layers › UBC-like › UBC-like › UBC-like 0.79 64.0 5.43e-01 100.0% 54.1%
1064503 216.1.1.1 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › UQ_con 0.79 68.0 5.82e-01 100.0% 59.4%
3486174 216.1.1.0 ↗ a+b two layers › UBC-like › UBC-like › UBC-like 0.79 64.0 5.43e-01 100.0% 54.1%
3239553 216.1.1.1 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › UQ_con 0.79 59.0 5.87e-01 95.4% 76.4%
6529 216.1.1.1 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › UQ_con 0.78 65.0 5.80e-01 100.0% 64.2%
3509550 216.1.1.1 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › UQ_con 0.78 69.0 5.95e-01 100.0% 63.1%
4943184 216.1.1.0 ↗ a+b two layers › UBC-like › UBC-like › UBC-like 0.76 56.0 5.58e-01 91.7% 74.5%
3312483 216.1.1.1 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › UQ_con 0.76 51.0 4.90e-01 78.7% 60.8%
3685687 216.1.1.1 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › UQ_con 0.76 69.0 5.91e-01 100.0% 64.2%
423717 216.1.1.1 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › UQ_con 0.76 58.0 5.08e-01 100.0% 55.8%
3719825 216.1.1.1 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › UQ_con 0.75 70.0 5.97e-01 100.0% 66.1%
3768060 216.1.1.1 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › UQ_con 0.75 66.0 4.96e-01 99.1% 40.8%
3994690 216.1.1.1 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › UQ_con 0.75 69.0 6.14e-01 100.0% 72.4%
3925799 216.1.1.1 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › UQ_con 0.75 68.0 5.31e-01 100.0% 49.5%
3673183 216.1.1.1 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › UQ_con 0.75 67.0 5.83e-01 95.4% 65.8%
4021748 216.1.1.0 ↗ a+b two layers › UBC-like › UBC-like › UBC-like 0.74 66.0 5.06e-01 99.1% 44.3%
3712011 216.1.1.1 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › UQ_con 0.74 69.0 5.84e-01 100.0% 62.9%
3598094 216.1.1.0 ↗ a+b two layers › UBC-like › UBC-like › UBC-like 0.74 69.0 5.77e-01 100.0% 61.1%
4626931 216.1.1.1 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › UQ_con 0.74 70.0 5.53e-01 100.0% 64.0%
4996953 216.1.1.1 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › UQ_con 0.74 68.0 5.76e-01 100.0% 62.4%
3859979 216.1.1.1 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › UQ_con 0.73 66.0 4.81e-01 99.1% 38.8%
3695812 216.1.1.1 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › UQ_con 0.73 67.0 5.03e-01 99.1% 43.3%
3475465 216.1.1.1 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › UQ_con 0.72 66.0 4.75e-01 100.0% 37.5%
3584320 216.1.1.1 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › UQ_con 0.72 68.0 5.48e-01 100.0% 82.1%
4627521 216.1.1.1 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › UQ_con 0.72 65.0 5.34e-01 100.0% 56.8%
4981874 216.1.1.1 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › UQ_con 0.71 65.0 5.48e-01 100.0% 66.3%
4849658 216.1.1.1 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › UQ_con 0.71 65.0 6.05e-01 100.0% 81.1%
3993904 216.1.1.1 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › UQ_con 0.70 65.0 5.30e-01 99.1% 56.8%
3789027 216.1.1.1 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › UQ_con 0.69 64.0 5.49e-01 98.1% 74.4%
3347601 216.1.1.3 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › UEV 0.67 59.0 5.19e-01 94.4% 65.8%
3399255 216.1.1.4 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › RWD 0.66 54.0 5.28e-01 94.4% 80.9%
3913149 216.1.1.3 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › UEV 0.66 58.0 5.17e-01 94.4% 87.3%
3818311 216.1.1.3 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › UEV 0.66 58.0 5.03e-01 94.4% 63.7%
3647962 216.1.1.3 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › UEV 0.66 57.0 5.19e-01 94.4% 71.7%
3892129 216.1.1.3 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › UEV 0.65 57.0 5.24e-01 94.4% 92.1%
3625971 216.1.1.3 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › UEV 0.65 57.0 5.16e-01 94.4% 89.7%
3891434 216.1.1.3 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › UEV 0.65 57.0 5.21e-01 94.4% 72.9%
3270992 216.1.1.3 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › UEV 0.59 52.0 4.73e-01 94.4% 90.0%
3596328 216.1.1.0 ↗ a+b two layers › UBC-like › UBC-like › UBC-like 0.57 46.0 4.05e-01 90.7% 81.2%
3938575 216.1.1.0 ↗ a+b two layers › UBC-like › UBC-like › UBC-like 0.57 39.0 4.04e-01 92.6% 74.3%
4608460 222.1.1.17 ↗ a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › PKS_DH_N 0.52 38.0 3.31e-01 76.9% 82.9%
3456551 331.3.1.43 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › PDF2_C 0.52 42.0 3.26e-01 89.8% 85.1%
3646440 252.1.1.3 ↗ a+b two layers › DNA-binding domain › Methyl-CpG-binding domain, MBD › Methyl-CpG-binding domain, MBD › DUF7081 0.51 38.0 3.98e-01 95.4% 86.0%
366771 244.3.1.3 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › SufE/NifU › SufE/NifU › CO_deh_flav_C 0.51 37.0 3.70e-01 94.4% 72.2%